Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JG0	61446	2025-07-25	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.63	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.68	0.0	0.04	16.58	0.00	2.589	8.63	4.53	2.1	97.9	0.0	1.12	1.69	0.63	0.79	2.71	7271	950	4	0	0	0	0	logfile
✔	9JFV	61441	2025-07-25	2024-09-05	2.67	2.24	2.67	1.8	0.005	0.84	2.0	0.05	16.64	0.00	2.199	16.88	0.83	5.4	94.2	0.4	-0.54	0.67	0.67	1.00	1.8	0.004	0.67	0.0	0.05	17.61	0.00	2.550	12.01	3.99	5.5	94.5	0.0	-0.11	1.26	0.67	0.67	1.58	7035	920	4	0	0	0	0	logfile
✔	9DiA	46902	2025-07-30	2024-09-05	2.97	3.51	3.01	3.4	0.003	0.56	0.0	0.05	15.04	0.00	1.649	7.05	0.42	4.7	95.3	0.0	-0.34	0.78	0.81	3.59	3.4	0.003	0.54	0.0	0.04	14.84	0.00	1.951	5.19	0.99	4.1	95.9	0.0	-0.43	1.17	0.78	0.82	3.55	12709	883	10	0	23	0	5806	logfile
✘	9DiS	46917	2025-07-24	2024-09-05	2.51	2.72	2.54	2.7	0.003	0.56	0.0	0.04	12.98	0.00	2.190	10.64	0.00	2.6	97.4	0.0	0.26	0.62	0.76	5.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5721	741	2	0	0	0	0	logfile
✔	9JFZ	61445	2025-07-25	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile
✔	9DiR	46916	2025-07-24	2024-09-05	2.97	3.27	3.04	3.3	0.004	0.58	0.0	0.04	12.37	0.00	2.124	10.18	0.00	3.3	96.7	0.0	0.24	0.37	0.56	1.55	3.3	0.004	0.63	0.0	0.04	16.29	0.00	2.531	10.01	3.53	2.9	97.1	0.0	-0.60	1.29	0.48	0.72	3.07	5889	756	2	0	0	0	0	logfile
✔	9Dii	46906	2025-07-24	2024-09-05	4.0	4.29	4.06	4.1	0.008	0.89	0.0	0.04	27.18	0.00	2.190	46.50	0.00	0.0	0.0	0.0	—	0.83	0.84	—	4.1	0.008	0.93	0.0	0.04	26.46	0.01	2.456	30.04	0.00	0.0	0.0	0.0	—	0.93	0.84	0.85	—	3894	0	2	184	0	0	0	logfile
✔	9JFY	61444	2025-07-26	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.40	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.003	0.58	0.0	0.04	16.57	0.00	2.286	5.91	1.91	1.5	98.5	0.0	1.27	0.72	0.64	0.78	1.87	8805	1133	7	0	1	0	0	logfile
✔	9DiG	46905	2025-07-24	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.008	0.77	0.0	0.04	24.78	0.00	2.121	19.04	0.00	0.0	0.0	0.0	—	0.95	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9JF8	61430	2025-07-23	2024-09-04	3.05	3.21	2.98	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.004	0.76	0.0	0.04	15.88	0.00	2.477	3.36	3.16	9.2	90.8	0.0	-0.48	0.96	0.52	0.82	3.51	3266	395	2	0	1	0	0	logfile
✔	9Go3	51489	2025-07-30	2024-09-04	3.15	4.71	2.83	3.1	0.003	0.54	0.0	0.04	15.18	0.00	2.215	5.47	0.38	1.5	98.2	0.3	2.64	0.68	0.70	2.22	3.1	0.004	0.61	0.0	0.04	15.02	0.00	2.432	8.01	1.24	2.3	97.4	0.3	3.06	1.44	0.74	0.87	2.48	12187	1771	7	0	0	0	0	logfile
✔	9DHD	46867	2025-07-28	2024-09-03	2.9	3.41	2.99	3.2	0.006	0.69	0.0	0.05	16.29	0.00	2.433	8.70	1.88	2.9	97.1	0.0	-0.84	0.81	0.86	3.56	3.2	0.006	0.66	0.0	0.05	16.59	0.00	2.481	8.00	2.33	2.8	97.2	0.0	-0.44	0.30	0.81	0.86	3.22	10063	1259	3	0	0	0	0	logfile
✔	9GNQ	51477	2025-07-27	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9DGG	46823	2025-07-31	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.68	0.0	0.04	27.35	0.00	2.516	9.54	2.18	3.2	96.8	0.0	2.51	0.57	0.90	0.89	2.33	13339	959	14	286	4	0	0	logfile
✔	9DGi	46828	2025-07-23	2024-09-02	3.35	3.68	3.43	3.7	0.008	1.48	0.0	0.07	13.49	0.01	2.462	1.47	0.99	10.1	89.5	0.4	-8.28	0.46	0.77	2.93	3.7	0.003	0.77	0.0	0.04	13.80	0.01	2.550	1.96	2.46	5.4	94.6	0.0	-4.71	0.58	0.46	0.77	2.92	2048	265	2	0	1	0	0	logfile
✔	9JDS	61398	2025-07-23	2024-09-01	3.4	3.56	3.61	3.7	0.009	1.48	15.0	0.17	10.59	0.01	2.228	3.63	1.12	8.0	92.0	0.0	-6.75	0.50	0.75	3.91	3.7	0.003	0.63	0.0	0.04	13.43	0.00	2.575	2.62	3.37	5.2	94.8	0.0	-2.62	0.50	0.45	0.73	2.32	3456	431	2	0	1	2	0	logfile
✔	9JDV	61399	2025-07-23	2024-09-01	3.32	3.91	3.55	3.9	0.013	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.004	0.74	0.0	0.04	16.35	0.00	2.281	10.48	4.06	2.6	97.4	0.0	1.92	1.08	0.48	0.73	1.28	3311	435	2	0	1	1	0	logfile
✔	9JDR	61397	2025-07-23	2024-09-01	3.5	3.86	3.66	4.0	0.008	1.25	5.0	0.06	11.08	0.01	2.246	4.31	0.29	7.2	92.8	0.0	-6.89	0.54	0.73	3.36	4.0	0.002	0.63	0.0	0.04	14.58	0.00	2.608	5.64	1.14	4.5	95.5	0.0	-2.65	0.64	0.52	0.72	2.03	3371	422	1	0	0	0	0	logfile
✔	9DG3	46822	2025-07-30	2024-09-01	3.46	4.35	3.61	3.6	0.005	0.79	0.0	0.05	28.10	0.01	2.182	9.07	0.15	2.6	97.4	0.0	1.39	0.92	0.86	1.88	3.6	0.005	0.66	0.0	0.04	27.86	0.00	2.110	11.60	1.82	3.5	96.5	0.0	2.02	0.46	0.92	0.88	1.64	12553	860	13	292	1	0	0	logfile
✔	9JE0	61403	2025-07-23	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.70	0.0	0.04	15.99	0.00	2.607	8.81	2.03	2.6	97.4	0.0	2.02	0.63	0.44	0.71	1.00	3321	435	2	0	1	1	0	logfile

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