Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JDG	61392	2025-07-23	2024-08-31	3.23	3.43	3.26	3.5	0.006	0.84	0.0	0.05	13.69	0.01	2.109	6.11	0.22	2.0	98.0	0.0	-0.46	0.60	0.82	3.31	3.5	0.004	0.54	0.0	0.04	15.04	0.00	2.614	6.11	1.09	2.2	97.8	0.0	1.47	0.35	0.60	0.82	2.36	4459	545	2	0	15	7	0	logfile
✔	9JDB	61387	2025-07-24	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.66	0.0	0.04	17.75	0.00	2.608	3.80	1.27	1.6	98.4	0.0	0.36	0.20	0.70	0.86	3.95	6592	808	4	0	2	0	0	logfile
✔	9JDL	61395	2025-07-26	2024-08-31	3.98	4.27	4.02	4.1	0.003	0.58	0.0	0.04	13.09	0.01	2.186	15.79	0.12	3.2	96.8	0.0	0.18	0.57	0.68	0.83	4.1	0.003	0.86	0.0	0.05	15.96	0.00	2.177	19.99	2.44	2.2	97.8	0.0	0.29	1.21	0.58	0.69	0.90	8136	1024	4	0	2	0	0	logfile
✔	9JDJ	61393	2025-07-26	2024-08-31	3.5	3.49	3.35	3.5	0.007	0.90	0.0	0.06	13.19	0.02	2.200	10.27	1.13	1.5	98.5	0.0	0.01	0.54	0.70	2.08	3.5	0.003	0.64	0.0	0.04	15.07	0.00	2.530	11.45	1.24	2.3	97.7	0.0	1.29	1.66	0.63	0.76	1.71	8456	1048	4	0	10	0	0	logfile
✔	9JDA	61386	2025-07-23	2024-08-31	3.23	3.40	3.13	3.3	0.004	0.61	0.0	0.04	12.99	0.01	2.130	8.38	0.00	2.9	97.1	0.0	-0.46	0.60	0.82	3.83	3.3	0.004	0.62	0.0	0.04	14.81	0.00	2.267	7.47	2.15	2.6	97.4	0.0	0.94	0.41	0.65	0.85	2.90	4417	552	2	0	8	0	0	logfile
✔	9JD3	61379	2025-07-23	2024-08-30	3.2	3.48	3.28	3.5	0.011	1.22	0.0	0.07	13.32	0.01	1.080	8.12	0.00	3.1	96.7	0.2	-0.02	0.59	0.80	2.71	3.5	0.004	0.60	0.0	0.04	14.64	0.00	2.618	7.35	1.09	2.8	97.2	0.0	1.07	0.32	0.59	0.80	2.32	4496	545	2	0	20	7	0	logfile
✔	9JCV	61377	2025-07-23	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile
✔	9JD9	61385	2025-07-24	2024-08-30	3.05	3.25	2.90	3.2	0.011	0.81	0.0	0.04	13.11	0.00	2.107	8.07	0.43	3.8	96.2	0.0	-0.56	0.54	0.79	3.25	3.2	0.003	0.54	0.0	0.04	14.41	0.00	2.239	6.11	2.14	2.9	97.1	0.0	1.08	1.11	0.63	0.84	2.27	4530	552	2	0	19	2	0	logfile
✘	9JD4	61380	2025-07-23	2024-08-30	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4457	551	2	0	12	0	0	logfile
✔	9JCZ	61378	2025-07-23	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.002	0.62	0.0	0.04	14.45	0.00	2.310	6.29	0.45	2.3	97.7	0.0	1.32	0.42	0.51	0.72	1.46	4364	525	2	0	11	2	0	logfile
✔	9JCE	61362	2025-07-24	2024-08-29	3.59	3.76	3.56	3.7	0.004	0.59	0.0	0.04	15.14	0.00	2.244	7.11	0.00	4.9	95.1	0.0	-0.51	0.71	0.81	1.24	3.7	0.003	0.61	0.0	0.04	16.69	0.00	2.504	8.65	2.86	5.2	94.8	0.0	1.31	1.02	0.73	0.82	1.15	5511	695	3	0	9	0	0	logfile
✔	9DDQ	46780	2025-07-27	2024-08-28	3.19	3.99	3.33	3.7	0.011	1.59	0.0	0.08	13.66	0.01	2.368	1.91	0.75	0.7	99.3	0.0	0.35	0.80	0.88	2.20	3.7	0.004	0.75	0.0	0.04	16.74	0.00	2.494	8.35	3.95	0.8	99.2	0.0	4.01	1.06	0.81	0.89	1.36	9069	1199	8	0	0	0	0	logfile
✔	9DDN	46777	2025-07-27	2024-08-28	3.18	4.03	3.42	3.8	0.012	1.62	1.0	0.09	13.46	0.01	2.015	2.87	0.71	1.3	98.7	0.0	-1.07	0.69	0.84	1.92	3.8	0.004	0.82	0.0	0.04	17.07	0.00	2.298	9.80	2.04	1.3	98.7	0.0	2.78	1.48	0.70	0.85	0.90	9470	1206	9	0	0	0	0	logfile
✔	9JC2	61340	2025-07-28	2024-08-28	3.96	6.12	4.29	4.8	0.003	0.62	0.0	0.04	12.39	0.00	2.199	9.17	0.56	1.6	98.3	0.1	4.35	0.61	0.76	0.79	4.9	0.005	0.83	0.0	0.05	12.09	0.00	2.376	17.06	4.87	2.5	97.5	0.1	3.53	0.97	0.62	0.81	0.26	10815	1875	21	0	0	0	0	logfile
✔	9DDM	46776	2025-07-27	2024-08-28	2.94	3.76	3.16	3.6	0.011	1.62	0.0	0.08	13.35	0.01	2.478	2.37	0.40	0.7	99.3	0.0	0.12	0.68	0.86	3.19	3.6	0.003	0.73	0.0	0.04	17.30	0.00	2.488	7.37	3.12	1.2	98.8	0.0	4.15	1.36	0.66	0.85	1.63	9582	1221	9	0	0	0	0	logfile
✔	9DDP	46779	2025-07-27	2024-08-28	3.16	3.88	3.28	3.7	0.011	1.61	0.0	0.08	13.13	0.01	2.339	3.28	0.85	0.9	99.1	0.0	0.40	0.78	0.88	2.98	3.7	0.004	0.72	0.0	0.04	16.63	0.00	2.463	8.35	2.77	1.2	98.8	0.0	3.93	1.77	0.79	0.89	1.14	9072	1199	8	0	0	0	0	logfile
✔	9GMD	51448	2025-07-28	2024-08-28	4.0	4.41	4.02	4.2	0.004	0.61	0.0	0.03	16.62	0.01	1.992	9.49	0.19	3.5	96.5	0.0	1.67	0.85	0.78	—	4.2	0.003	0.57	0.0	0.03	17.30	0.00	2.319	6.46	2.42	2.9	97.1	0.0	2.39	0.82	0.84	0.80	—	9919	611	6	0	0	0	4925	logfile
✔	9DDo	46778	2025-07-27	2024-08-28	2.8	3.75	2.98	3.4	0.011	1.61	0.0	0.08	13.50	0.01	2.442	0.91	0.74	0.5	99.5	0.0	0.89	0.80	0.88	3.52	3.4	0.004	0.72	0.0	0.04	16.42	0.00	2.476	7.04	2.64	1.2	98.8	0.0	4.34	1.03	0.81	0.90	1.88	9252	1209	10	0	2	0	0	logfile
✔	9JBX	61329	2025-07-25	2024-08-27	3.87	3.14	4.08	2.0	0.003	0.70	0.0	0.04	12.22	0.01	2.056	15.51	0.00	3.1	96.8	0.1	0.74	0.64	0.67	0.64	2.9	0.003	0.73	0.0	0.05	14.93	0.00	2.407	13.39	3.19	2.6	97.3	0.1	0.51	0.62	0.65	0.68	0.57	7948	1016	1	0	0	0	0	logfile
✘	9JBG	61313	2025-07-28	2024-08-27	3.76	3.93	3.74	3.8	0.006	0.98	0.0	0.06	18.84	0.01	2.222	14.25	1.73	5.5	94.5	0.0	-1.18	0.56	0.74	1.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10187	1259	4	0	6	0	0	logfile

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