Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SYi	40874	2025-05-27	2023-05-25	2.94	3.75	3.00	3.4	0.004	0.64	0.0	0.04	20.72	0.01	2.138	6.87	6.06	7.7	91.9	0.3	-1.52	0.89	0.87	2.21	3.5	0.003	0.64	0.0	0.04	20.01	0.00	2.111	5.94	3.65	6.6	93.1	0.3	-0.63	0.56	0.87	0.89	1.89	29500	3537	12	91	3	0	0	logfile
✔	8P65	17461	2025-05-30	2023-05-25	3.0	3.47	3.39	3.4	0.005	0.64	0.0	0.04	17.92	0.00	2.056	10.05	6.10	5.2	94.4	0.4	-0.20	0.72	0.70	0.67	3.4	0.004	0.68	0.0	0.04	18.04	0.00	2.482	9.81	3.90	4.8	94.9	0.3	0.39	0.86	0.75	0.78	1.94	33820	4278	28	0	8	0	0	logfile
✔	8JHY	36300	2025-05-12	2023-05-25	2.87	2.15	—	2.8	0.007	0.96	0.0	0.05	13.90	0.01	2.078	10.20	0.00	5.7	94.3	0.0	-2.25	0.75	0.77	3.68	2.0	0.002	0.64	0.0	0.04	16.04	0.00	2.520	5.76	1.93	3.3	96.7	0.0	-0.40	0.40	0.76	0.79	2.43	9073	1144	6	0	2	0	0	logfile
✘	8SY5	40862	2025-05-21	2023-05-24	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21411	2682	16	45	3	375	0	logfile
✔	8SXT	40858	2025-05-10	2023-05-24	3.3	2.61	3.31	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.68	0.0	0.04	18.54	0.00	1.993	9.86	3.47	4.0	96.0	0.0	0.73	0.64	0.76	0.78	2.16	6382	726	5	18	2	0	0	logfile
✔	8SXU	40859	2025-05-10	2023-05-24	3.66	2.81	3.65	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.9	0.003	0.77	0.0	0.04	18.32	0.00	2.438	14.47	4.68	5.7	94.3	0.0	-0.26	0.66	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✘	8SY7	40864	2025-05-21	2023-05-24	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21159	2737	16	43	3	413	0	logfile
✔	8JHi	36266	2025-05-11	2023-05-23	3.2	3.84	3.47	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.005	0.73	0.0	0.04	16.04	0.00	2.315	11.56	2.80	6.3	93.7	0.0	-0.25	0.95	0.63	0.81	2.10	8562	1077	5	0	0	0	0	logfile
✔	8JHF	36264	2025-05-17	2023-05-23	3.68	3.48	3.64	3.5	0.004	0.61	0.0	0.03	27.23	0.00	2.111	8.03	0.70	4.8	95.2	0.0	0.59	0.80	0.82	1.35	3.5	0.004	0.61	0.0	0.03	27.77	0.00	2.476	7.02	1.87	4.9	95.1	0.0	0.98	0.39	0.80	0.83	0.84	14703	1029	12	320	2	0	0	logfile
✔	8JHC	36262	2025-05-11	2023-05-23	3.3	2.39	3.35	2.1	0.004	0.70	0.0	0.05	14.17	0.01	2.227	5.42	0.00	5.7	94.3	0.0	-1.38	0.75	0.76	2.45	2.1	0.004	0.68	0.0	0.04	16.10	0.01	2.429	9.50	3.59	6.3	93.7	0.0	-0.05	0.95	0.75	0.76	1.79	7563	986	4	0	0	0	0	logfile
✔	8P51	17436	2025-05-15	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.003	0.67	0.0	0.04	15.01	0.00	2.493	5.74	0.75	2.8	97.1	0.1	1.32	1.70	0.88	0.84	1.48	12389	1574	1	0	0	0	0	logfile
✔	8P50	17435	2025-05-16	2023-05-23	4.04	5.40	4.05	3.9	0.008	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	4.1	0.002	0.68	0.0	0.04	14.07	0.00	2.017	6.46	0.20	3.7	96.2	0.1	0.72	1.30	0.58	0.01	—	13714	1735	3	0	2	0	0	logfile
✔	8P4X	17429	2025-05-12	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	2.8	0.004	0.69	0.0	0.05	15.51	0.01	2.485	2.00	1.19	2.3	97.7	0.0	0.31	0.35	0.72	0.86	4.56	8756	1052	6	0	4	84	0	logfile
✔	8P52	17440	2025-05-22	2023-05-23	3.6	3.64	—	3.4	0.002	0.63	0.0	0.04	13.73	0.01	2.166	3.44	0.00	5.6	94.4	0.0	-2.19	0.78	0.55	1.88	3.4	0.003	0.65	0.0	0.04	15.59	0.00	2.438	7.06	1.62	3.9	96.0	0.0	0.14	1.54	0.85	0.75	1.50	22783	2914	1	0	0	0	0	logfile
✔	8JHK	36271	2025-05-21	2023-05-23	4.76	3.55	4.40	3.3	0.006	0.94	0.0	0.05	14.92	0.01	2.041	36.60	0.00	11.8	88.2	0.0	-3.03	0.76	0.76	—	3.4	0.003	0.81	0.0	0.05	15.23	0.00	2.334	19.31	0.00	7.4	92.6	0.0	-1.58	1.45	0.76	0.75	—	20512	2509	3	0	0	0	0	logfile
✔	8P4T	17428	2025-05-13	2023-05-23	2.96	3.61	2.92	3.4	0.002	0.59	0.0	0.04	11.92	0.00	2.214	7.87	0.00	2.5	97.5	0.0	0.32	0.81	0.80	3.12	3.4	0.004	0.70	0.0	0.04	14.68	0.00	2.223	6.81	2.38	1.3	98.7	0.0	1.27	1.14	0.75	0.86	2.77	9976	1122	24	0	64	0	0	logfile
✔	8P53	17445	2025-05-18	2023-05-23	2.7	2.29	2.80	2.0	0.004	0.65	0.0	0.04	13.22	0.00	1.943	8.14	0.11	3.2	96.8	0.0	-0.24	0.79	0.81	3.54	2.0	0.004	0.64	0.0	0.04	16.63	0.00	1.965	6.86	2.28	3.7	96.3	0.0	0.44	0.79	0.80	0.82	2.98	16299	2071	8	0	4	0	0	logfile
✔	8JHB	36261	2025-05-12	2023-05-23	3.3	2.35	3.36	2.1	0.003	0.75	0.0	0.05	14.03	0.00	2.146	6.34	0.11	4.7	95.3	0.0	-0.77	0.72	0.71	1.81	2.0	0.004	0.65	0.0	0.04	16.52	0.00	2.398	8.96	2.35	4.8	95.2	0.0	0.02	0.44	0.72	0.73	1.91	8648	1093	5	0	0	0	0	logfile
✔	8JHG	36265	2025-05-17	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.003	0.59	0.0	0.03	26.76	0.00	2.505	7.95	1.39	4.4	95.6	0.0	0.97	1.35	0.81	0.83	1.07	14829	1040	12	320	2	0	0	logfile
✔	8P4N	17420	2025-05-29	2023-05-23	2.9	3.12	2.97	3.2	0.013	0.67	0.0	0.05	13.69	0.00	1.307	5.73	0.06	1.3	98.7	0.0	1.35	0.76	0.82	2.72	3.2	0.004	0.62	0.0	0.04	16.62	0.00	0.920	5.11	2.40	1.4	98.6	0.0	1.49	1.16	0.76	0.84	1.97	32130	4333	28	0	28	133	0	logfile

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