Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P4K	17410	2025-05-27	2023-05-22	3.8	3.61	4.20	3.8	0.020	2.62	0.0	0.10	9.97	0.01	2.351	1.00	0.00	1.0	99.0	0.0	0.04	0.30	0.42	1.07	3.6	0.004	1.09	0.0	0.04	13.73	0.00	2.367	12.42	1.08	5.4	94.6	0.0	-0.05	0.82	0.37	0.53	1.01	29211	1797	3	0	0	0	14643	logfile
✔	8JH7	36258	2025-05-11	2023-05-22	3.2	2.35	3.27	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.71	0.0	0.04	15.99	0.00	2.385	9.87	2.89	5.5	94.4	0.1	0.06	1.03	0.75	0.76	2.24	7663	988	4	0	0	0	0	logfile
✔	8JH5	36254	2025-05-11	2023-05-22	3.7	3.92	3.72	3.9	0.006	0.96	0.0	0.05	9.93	0.01	2.319	3.06	0.00	5.9	94.1	0.0	-5.76	0.61	0.83	2.59	3.9	0.003	0.68	0.0	0.04	14.44	0.00	2.438	4.98	2.54	3.5	96.5	0.0	-0.50	0.73	0.60	0.83	0.99	7734	988	6	0	2	0	0	logfile
✔	8SXH	40852	2025-05-20	2023-05-22	3.94	4.17	3.93	4.1	0.003	0.46	0.0	0.04	13.70	0.00	1.996	7.04	0.00	4.2	95.8	0.0	1.11	0.80	0.77	1.36	4.1	0.003	0.63	0.0	0.04	15.62	0.00	2.494	7.45	1.48	3.3	96.7	0.0	0.81	0.51	0.80	0.77	1.20	19719	2604	12	0	21	0	0	logfile
✔	8SXN	40855	2025-05-19	2023-05-22	4.04	4.34	4.06	4.1	0.012	1.26	0.0	0.06	12.20	0.01	2.369	2.31	0.05	3.0	95.8	1.1	-0.38	0.87	0.82	—	4.1	0.003	0.65	0.0	0.04	14.30	0.00	2.356	8.24	0.00	5.7	94.0	0.3	-0.04	1.88	0.87	0.83	—	17708	2200	6	0	4	0	0	logfile
✔	8SXJ	40854	2025-05-19	2023-05-22	4.0	4.15	4.00	4.2	0.019	1.76	7.0	0.09	13.38	0.02	2.555	0.19	1.10	7.0	92.3	0.7	-1.09	0.63	0.78	—	4.2	0.005	0.77	0.0	0.05	16.34	0.00	2.523	8.64	3.00	5.9	94.0	0.0	-0.52	0.79	0.67	0.81	—	19050	2415	12	0	0	0	0	logfile
✔	8SXE	40849	2025-05-11	2023-05-22	3.55	3.79	3.56	3.7	0.002	0.47	0.0	0.04	14.58	0.00	2.089	6.48	0.00	3.6	96.4	0.0	0.44	0.75	0.76	1.64	3.7	0.003	0.61	0.0	0.04	16.66	0.00	2.490	7.08	2.04	3.8	96.2	0.0	0.45	0.49	0.76	0.77	1.27	8285	1094	6	0	7	0	0	logfile
✔	8SXF	40850	2025-05-14	2023-05-22	3.92	4.19	3.95	4.0	0.002	0.48	0.0	0.04	15.08	0.00	2.063	9.57	0.00	3.7	96.3	0.0	1.25	0.79	0.72	0.88	4.0	0.004	0.65	0.0	0.04	16.79	0.00	2.488	11.42	2.35	3.5	96.5	0.0	0.86	0.54	0.80	0.74	0.90	11321	1471	5	0	6	0	0	logfile
✔	8SXG	40851	2025-05-14	2023-05-22	4.14	4.41	4.03	4.2	0.002	0.50	0.0	0.04	14.01	0.00	1.889	8.99	0.00	3.3	96.7	0.0	0.78	0.83	0.74	—	4.2	0.003	0.59	0.0	0.04	14.66	0.00	2.525	10.05	0.00	3.4	96.6	0.0	0.68	0.47	0.83	0.76	—	11372	1477	5	0	6	0	0	logfile
✘	8SXi	40853	2025-05-19	2023-05-22	4.5	4.37	4.46	4.3	0.006	1.01	0.0	0.06	14.40	0.01	1.987	5.43	0.05	6.2	93.4	0.4	-1.44	0.60	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19257	2439	12	0	0	0	0	logfile
✔	8JGS	36245	2025-05-20	2023-05-21	3.96	3.93	3.85	3.9	0.003	0.57	0.0	0.04	13.47	0.01	1.903	15.84	0.00	5.0	95.0	0.0	-0.58	0.38	0.43	0.39	3.9	0.004	0.63	0.0	0.04	15.44	0.00	2.338	15.10	1.13	5.9	94.1	0.0	-0.32	1.12	0.39	0.47	0.21	20268	1278	2	0	0	0	10182	logfile
✔	8JGV	36246	2025-05-21	2023-05-21	2.98	3.22	3.03	3.2	0.004	0.60	0.0	0.04	14.13	0.00	1.955	9.50	0.18	3.2	96.8	0.0	0.71	0.53	0.70	3.30	3.2	0.005	0.58	0.0	0.04	15.94	0.00	2.202	7.15	1.44	3.8	96.2	0.0	1.00	0.41	0.53	0.72	2.33	21214	1336	4	0	2	0	10630	logfile
✔	8JGN	36240	2025-05-21	2023-05-21	3.39	3.14	3.35	3.4	0.012	1.80	0.0	0.10	13.71	0.01	2.253	1.65	0.04	2.6	97.4	0.0	-1.77	0.57	0.72	4.36	3.4	0.004	0.64	0.0	0.04	15.90	0.00	2.479	2.66	2.03	3.2	96.8	0.0	-0.11	0.55	0.76	0.90	3.44	21360	2688	6	0	0	0	0	logfile
✔	8JGL	36238	2025-05-21	2023-05-21	3.14	3.24	3.07	3.3	0.004	0.62	0.0	0.04	14.10	0.01	2.078	8.85	0.00	1.2	98.8	0.0	0.40	0.55	0.71	2.50	3.3	0.003	0.56	0.0	0.04	15.17	0.00	2.384	6.22	1.23	2.7	97.3	0.0	1.29	1.10	0.56	0.75	2.37	21662	1368	6	0	2	2	10868	logfile
✔	8JGM	36239	2025-05-21	2023-05-21	2.89	3.71	2.82	3.2	0.012	1.73	0.0	0.10	12.90	0.01	2.299	1.12	0.09	2.1	97.9	0.0	-0.75	0.87	0.82	4.27	3.2	0.003	0.63	0.0	0.04	14.44	0.00	2.503	2.71	0.63	2.8	97.2	0.0	0.50	4.37	0.91	0.91	3.27	21120	2652	6	0	0	0	0	logfile
✘	8JGK	36237	2025-05-21	2023-05-21	4.04	4.09	3.96	4.1	0.003	0.56	0.0	0.04	14.40	0.00	1.966	12.26	0.00	3.7	96.3	0.0	0.73	0.54	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21650	1368	4	0	2	0	10850	logfile
✔	8JGG	36233	2025-05-11	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.002	0.56	0.0	0.04	15.53	0.00	2.527	4.32	2.76	3.0	97.0	0.0	0.17	0.97	0.59	0.80	2.89	7889	1076	6	0	0	0	0	logfile
✔	8SX8	40827	2025-05-20	2023-05-20	3.5	3.82	3.46	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.003	0.54	0.0	0.04	14.18	0.00	2.300	4.46	0.88	1.2	98.8	0.0	2.01	1.44	0.63	0.79	1.24	19025	1175	2	0	1	1	9610	logfile
✔	8SXB	40830	2025-05-19	2023-05-20	2.9	3.19	2.99	3.2	0.006	0.83	0.0	0.06	12.61	0.01	2.288	0.97	0.00	2.0	98.0	0.0	-0.86	0.61	0.81	2.92	3.1	0.003	0.52	0.0	0.04	14.60	0.00	2.306	3.65	0.90	2.0	98.0	0.0	1.89	1.14	0.59	0.81	2.03	18604	1152	2	0	1	1	9405	logfile
✔	8JGJ	36236	2025-05-21	2023-05-20	3.3	3.42	3.22	3.4	0.009	0.56	0.0	0.04	14.58	0.00	1.986	9.81	0.00	1.9	98.1	0.0	0.23	0.61	0.73	1.93	3.4	0.004	0.54	0.0	0.04	15.24	0.00	2.476	6.54	1.41	3.3	96.7	0.0	0.87	0.41	0.59	0.75	1.99	21668	1368	6	0	8	4	10850	logfile

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