Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JGC	36230	2025-05-09	2023-05-20	3.44	3.77	3.03	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.005	0.66	0.0	0.05	16.01	0.01	2.602	5.17	1.86	6.0	94.0	0.0	-0.69	0.98	0.54	0.78	2.99	1516	202	1	0	0	0	0	logfile
✘	8SX9	40828	2025-05-19	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8JGB	36229	2025-05-11	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.003	0.68	0.0	0.04	16.56	0.00	2.534	4.10	3.28	3.5	96.5	0.0	-0.06	0.52	0.83	0.83	3.82	7796	1062	6	0	0	0	0	logfile
✔	8JGJ	36236	2025-05-21	2023-05-20	3.3	3.42	3.22	3.4	0.009	0.56	0.0	0.04	14.58	0.00	1.986	9.81	0.00	1.9	98.1	0.0	0.23	0.61	0.73	1.93	3.4	0.004	0.54	0.0	0.04	15.24	0.00	2.476	6.54	1.41	3.3	96.7	0.0	0.87	0.41	0.59	0.75	1.99	21668	1368	6	0	8	4	10850	logfile
✔	8SX8	40827	2025-05-20	2023-05-20	3.5	3.82	3.46	3.7	0.005	0.84	0.0	0.06	12.22	0.01	2.132	0.95	0.10	2.0	98.0	0.0	-1.93	0.62	0.79	2.30	3.7	0.003	0.54	0.0	0.04	14.18	0.00	2.300	4.46	0.88	1.2	98.8	0.0	2.01	1.44	0.63	0.79	1.24	19025	1175	2	0	1	1	9610	logfile
✔	8JGG	36233	2025-05-11	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.002	0.56	0.0	0.04	15.53	0.00	2.527	4.32	2.76	3.0	97.0	0.0	0.17	0.97	0.59	0.80	2.89	7889	1076	6	0	0	0	0	logfile
✘	8SXA	40829	2025-05-19	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8JGA	36228	2025-05-09	2023-05-20	3.68	3.83	3.22	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.66	0.0	0.05	16.63	0.00	2.638	7.75	1.24	4.0	96.0	0.0	-0.79	0.44	0.57	0.79	2.22	1516	202	1	0	0	0	0	logfile
✔	8JFZ	36220	2025-05-22	2023-05-19	3.5	3.45	3.49	3.6	0.011	1.57	0.0	0.07	18.97	0.01	2.026	18.66	7.50	5.9	94.0	0.2	-1.79	0.71	0.78	1.41	3.5	0.005	0.72	0.0	0.04	16.44	0.00	1.958	7.41	1.69	3.2	96.8	0.0	0.82	0.86	0.73	0.82	1.77	22340	2642	22	0	70	6	0	logfile
✔	8P49	17402	2025-05-19	2023-05-19	2.79	3.50	2.99	3.4	0.002	0.44	0.0	0.04	11.69	0.00	2.233	3.77	0.95	1.8	98.2	0.0	1.58	0.78	0.85	2.78	3.4	0.003	0.62	0.0	0.04	14.09	0.00	2.442	5.00	1.10	1.5	98.5	0.0	1.27	0.94	0.76	0.83	2.68	17914	2192	6	0	0	0	0	logfile
✔	8SWV	40822	2025-05-16	2023-05-19	3.37	3.49	3.25	3.5	0.022	1.67	0.0	0.13	11.21	0.01	2.201	0.94	0.21	2.0	97.9	0.1	0.72	0.64	0.82	3.79	3.5	0.004	0.66	0.0	0.04	13.72	0.00	2.506	4.55	1.73	2.9	97.1	0.0	0.35	1.23	0.57	0.82	2.96	14870	1626	21	0	290	0	0	logfile
✔	8SWW	40823	2025-05-16	2023-05-19	3.4	3.55	3.38	3.5	0.021	1.71	0.0	0.12	10.73	0.01	2.231	0.95	0.00	2.7	97.3	0.0	0.60	0.60	0.80	3.83	3.5	0.005	0.74	0.0	0.05	14.36	0.00	2.477	6.68	2.72	4.3	95.7	0.0	-0.33	1.64	0.58	0.81	2.61	14799	1657	20	0	267	0	0	logfile
✔	8JFY	36219	2025-05-14	2023-05-19	2.79	3.07	2.94	3.1	0.005	0.61	0.0	0.04	15.45	0.00	2.127	7.01	0.39	1.9	97.8	0.3	1.14	0.61	0.78	2.26	3.1	0.003	0.63	0.0	0.04	16.78	0.00	2.079	4.59	1.78	3.0	96.8	0.1	0.65	0.45	0.66	0.83	2.47	11870	1472	8	0	18	0	0	logfile
✔	8SX3	40825	2025-05-10	2023-05-19	4.0	4.24	3.98	4.2	0.010	1.45	0.0	0.07	14.59	0.01	2.144	2.53	0.00	1.8	98.2	0.0	0.92	0.77	0.76	—	4.1	0.007	1.27	1.0	0.05	15.73	0.00	1.982	21.81	3.68	4.1	95.7	0.2	0.33	1.57	0.79	0.81	—	4816	614	6	0	2	0	0	logfile
✔	8SWN	40821	2025-05-19	2023-05-19	3.1	3.32	3.07	3.3	0.020	1.67	85.0	0.20	13.42	0.01	1.789	0.38	0.00	1.2	98.8	0.0	-0.67	0.67	0.86	4.37	3.3	0.003	0.51	0.0	0.04	15.17	0.00	1.810	2.97	1.22	1.5	98.5	0.0	2.43	2.22	0.66	0.85	2.51	18422	1135	2	0	5	0	9269	logfile
✔	8JFW	36218	2025-05-10	2023-05-19	3.64	3.84	3.67	3.8	0.003	0.60	0.0	0.04	15.17	0.00	2.029	6.16	0.15	2.7	97.3	0.0	1.30	0.69	0.81	1.84	3.8	0.002	0.53	0.0	0.04	16.01	0.00	2.026	4.16	1.21	2.4	97.6	0.0	1.19	0.29	0.69	0.81	1.61	6076	758	3	0	2	0	0	logfile
✔	8SWX	40824	2025-05-17	2023-05-19	3.9	4.01	3.78	4.0	0.022	1.72	0.0	0.14	11.07	0.01	2.272	1.27	0.41	2.4	97.5	0.1	0.79	0.59	0.80	2.83	4.0	0.005	0.95	1.0	0.05	14.63	0.00	2.173	8.73	3.72	3.9	96.0	0.1	0.06	1.29	0.57	0.81	2.14	15170	1658	20	0	278	0	0	logfile
✔	8P3T	17394	2025-05-18	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.6	0.003	0.62	0.0	0.04	15.72	0.00	2.548	8.96	2.81	1.6	98.4	0.0	2.38	0.72	0.67	0.83	1.86	16861	2237	8	0	0	0	0	logfile
✔	8SWH	40814	2025-05-09	2023-05-18	3.88	4.03	3.86	3.9	0.022	1.94	0.0	0.12	12.95	0.01	2.378	1.51	0.27	3.2	96.8	0.0	-0.15	0.61	0.66	2.42	3.9	0.005	0.93	0.0	0.05	16.32	0.01	2.470	20.92	4.37	8.6	91.1	0.2	-2.32	2.55	0.63	0.70	2.39	3390	422	5	0	5	0	0	logfile
✔	8JFT	36217	2025-05-13	2023-05-18	3.31	4.08	3.57	3.9	0.008	1.27	2.0	0.09	18.18	0.01	2.264	11.41	0.90	2.9	97.1	0.0	0.00	0.70	0.72	2.30	3.9	0.004	0.62	0.0	0.04	18.51	0.00	2.511	8.92	1.99	3.0	97.0	0.0	0.61	1.21	0.66	0.70	2.03	11176	1151	3	86	0	0	0	logfile

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