Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P3X	17398	2025-05-18	2023-05-18	3.36	3.85	3.33	3.6	0.013	1.66	2.0	0.11	14.28	0.01	2.232	7.73	1.68	4.4	95.4	0.2	-1.65	0.62	0.66	1.61	3.6	0.003	0.70	0.0	0.04	15.21	0.00	2.454	8.30	2.40	2.4	97.6	0.0	2.07	1.67	0.67	0.83	1.64	17035	2293	8	0	0	0	0	logfile
✔	8P3S	17393	2025-05-19	2023-05-18	2.95	3.61	3.08	3.4	0.012	1.46	5.0	0.11	15.80	0.01	2.216	4.98	1.80	4.3	95.2	0.5	-0.32	0.53	0.50	2.45	3.4	0.007	1.11	3.0	0.06	15.80	0.01	2.222	11.25	1.80	2.2	97.7	0.2	1.91	0.85	0.65	0.82	2.32	18195	2316	21	0	16	7	0	logfile
✔	8P3V	17396	2025-05-18	2023-05-18	3.53	3.91	3.28	3.6	0.011	1.33	3.0	0.10	15.53	0.01	2.259	11.55	5.25	2.9	96.6	0.6	0.15	0.62	0.70	2.12	3.6	0.003	0.63	0.0	0.04	15.36	0.00	2.512	8.43	2.68	1.4	98.6	0.0	2.60	0.67	0.67	0.82	2.06	16914	2247	8	0	0	0	0	logfile
✔	8P3Y	17399	2025-05-18	2023-05-18	3.55	3.90	3.42	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.003	0.71	0.0	0.04	15.00	0.00	2.355	9.45	1.86	2.2	97.8	0.1	1.79	0.86	0.67	0.82	1.47	17012	2291	8	0	0	0	0	logfile
✔	8P3Z	17400	2025-05-18	2023-05-18	3.46	3.90	3.31	3.6	0.013	1.65	2.0	0.11	14.12	0.02	2.217	8.69	1.02	4.4	95.3	0.4	-1.65	0.56	0.57	0.42	3.6	0.004	0.74	0.0	0.04	15.55	0.00	2.356	10.74	2.71	2.8	97.2	0.0	1.69	1.86	0.66	0.82	1.41	16974	2284	8	0	0	0	0	logfile
✔	8P3Q	17392	2025-05-19	2023-05-18	2.95	3.72	3.12	3.5	0.010	1.37	2.0	0.08	18.61	0.01	2.310	13.78	9.79	5.9	93.2	1.0	-1.51	0.69	0.84	2.07	3.5	0.004	0.73	0.0	0.04	17.09	0.00	2.354	10.93	2.42	3.3	96.5	0.2	1.52	1.71	0.63	0.79	2.03	18047	2299	19	0	16	7	0	logfile
✔	8P3T	17394	2025-05-18	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.6	0.003	0.62	0.0	0.04	15.72	0.00	2.548	8.96	2.81	1.6	98.4	0.0	2.38	0.72	0.67	0.83	1.86	16861	2237	8	0	0	0	0	logfile
✔	8JFT	36217	2025-05-13	2023-05-18	3.31	4.08	3.57	3.9	0.008	1.27	2.0	0.09	18.18	0.01	2.264	11.41	0.90	2.9	97.1	0.0	0.00	0.70	0.72	2.30	3.9	0.004	0.62	0.0	0.04	18.51	0.00	2.511	8.92	1.99	3.0	97.0	0.0	0.61	1.21	0.66	0.70	2.03	11176	1151	3	86	0	0	0	logfile
✔	8P3o	17387	2025-05-21	2023-05-18	2.9	4.09	2.96	3.3	0.003	0.72	0.0	0.04	17.21	0.00	2.204	7.12	0.41	3.9	96.1	0.0	1.02	0.78	0.89	2.31	3.3	0.003	0.71	0.0	0.04	17.26	0.00	2.498	5.61	1.27	3.9	96.1	0.0	2.96	0.54	0.78	0.88	2.03	21192	2656	8	0	0	0	0	logfile
✔	8P3W	17397	2025-05-19	2023-05-18	3.53	3.95	3.35	3.6	0.012	1.63	19.0	0.13	15.87	0.02	1.988	8.93	3.17	3.0	96.9	0.1	-0.44	0.65	0.75	2.71	3.6	0.005	0.69	0.0	0.04	15.70	0.00	2.480	10.15	1.82	1.6	98.4	0.0	2.02	0.85	0.67	0.80	2.15	17485	2251	24	0	14	33	0	logfile
✔	8P34	17383	2025-05-09	2023-05-17	2.61	2.80	2.23	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	8SW3	40796	2025-05-23	2023-05-17	2.8	3.03	2.82	3.1	0.006	1.08	0.0	0.06	11.68	0.02	2.180	1.84	0.19	2.3	97.7	0.0	0.68	0.58	0.75	4.35	3.1	0.003	0.63	0.0	0.04	14.32	0.00	2.470	6.24	1.69	2.0	98.0	0.0	-0.02	0.53	0.68	0.82	3.81	24819	3099	30	0	60	0	0	logfile
✔	8SW4	40797	2025-05-24	2023-05-17	2.85	3.10	2.89	3.1	0.008	1.21	0.0	0.07	13.70	0.01	2.012	2.93	0.14	1.9	98.1	0.0	0.45	0.69	0.82	4.31	3.1	0.006	0.69	0.0	0.05	14.70	0.00	2.466	6.64	2.22	3.0	97.0	0.0	-0.04	1.13	0.71	0.84	4.48	26323	3303	30	0	47	0	0	logfile
✔	8P36	17384	2025-05-09	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.53	0.0	0.04	18.52	0.00	2.616	5.32	3.15	3.1	96.9	0.0	1.34	0.51	0.30	0.87	2.52	1223	161	2	0	2	0	0	logfile
✔	8SW7	40810	2025-05-17	2023-05-17	3.37	3.85	3.92	3.9	0.023	1.74	0.0	0.13	11.37	0.01	2.188	1.14	0.14	2.2	97.8	0.1	0.77	0.58	0.77	2.95	3.8	0.004	0.73	0.0	0.04	14.68	0.00	2.482	7.19	3.99	3.1	96.9	0.0	-0.05	1.31	0.51	0.78	2.12	15133	1664	17	0	289	0	0	logfile
✔	8JET	36195	2025-05-20	2023-05-16	3.1	2.32	3.02	3.2	0.002	0.43	0.0	0.04	9.65	0.00	2.269	3.61	1.54	5.4	94.6	0.0	-0.08	0.69	0.80	1.95	3.2	0.002	0.59	0.0	0.04	12.75	0.00	2.495	6.32	1.54	6.0	94.0	0.0	1.51	1.55	0.70	0.81	1.54	19526	2612	4	0	0	0	0	logfile
✔	8JEJ	36190	2025-05-12	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.36	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.007	1.44	0.0	0.06	17.88	0.01	1.804	5.87	2.26	4.0	96.0	0.0	0.69	0.24	0.69	0.88	4.71	8604	1089	5	0	6	0	0	logfile
✔	8JF0	36205	2025-05-10	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.84	0.0	0.05	15.44	0.00	2.421	13.82	2.96	2.2	97.8	0.0	0.99	1.49	0.72	0.75	1.54	6578	872	2	0	0	0	0	logfile
✔	8P2i	17366	2025-05-25	2023-05-16	3.4	4.05	3.31	3.5	0.003	0.65	0.0	0.04	15.88	0.00	2.002	8.55	0.20	2.6	97.4	0.0	0.80	0.78	0.74	2.55	3.5	0.002	0.68	0.0	0.04	16.59	0.00	2.056	5.92	1.48	2.4	97.6	0.0	1.08	1.04	0.91	0.88	2.38	27479	3430	18	0	7	0	0	logfile
✘	8JF1	36206	2025-05-18	2023-05-16	2.85	2.80	2.84	3.0	0.091	2.85	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile

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