Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JEW	36201	2025-05-11	2023-05-16	2.49	2.22	2.41	2.4	0.015	1.79	0.0	0.08	15.57	0.01	1.932	6.25	0.48	3.0	97.0	0.0	-0.48	0.62	0.79	4.58	2.4	0.004	0.69	0.0	0.04	16.44	0.01	2.219	6.84	1.67	1.7	98.3	0.0	2.14	1.08	0.73	0.84	3.62	8284	1024	4	0	20	6	0	logfile
✔	8JEZ	36204	2025-05-11	2023-05-16	2.6	2.34	2.59	2.6	0.016	1.89	0.0	0.10	17.04	0.02	2.325	6.13	0.48	2.2	97.8	0.0	-0.01	0.64	0.80	3.85	2.6	0.004	0.66	0.0	0.04	16.66	0.00	2.520	8.20	2.26	1.5	98.5	0.0	1.99	2.27	0.71	0.83	3.18	8282	1026	6	0	16	0	0	logfile
✔	8P2i	17366	2025-05-25	2023-05-16	3.4	4.05	3.31	3.5	0.003	0.65	0.0	0.04	15.88	0.00	2.002	8.55	0.20	2.6	97.4	0.0	0.80	0.78	0.74	2.55	3.5	0.002	0.68	0.0	0.04	16.59	0.00	2.056	5.92	1.48	2.4	97.6	0.0	1.08	1.04	0.91	0.88	2.38	27479	3430	18	0	7	0	0	logfile
✔	8P30	17381	2025-05-21	2023-05-16	3.29	3.73	3.33	3.6	0.004	0.60	0.0	0.04	14.22	0.01	2.027	6.21	0.23	2.7	97.3	0.0	1.31	0.70	0.81	2.56	3.6	0.004	0.65	0.0	0.04	14.28	0.00	2.013	7.76	1.49	3.1	96.9	0.0	1.76	0.67	0.74	0.86	2.13	21074	2644	14	0	36	0	0	logfile
✔	8P31	17382	2025-05-21	2023-05-16	3.24	3.64	3.29	3.5	0.004	0.62	0.0	0.04	14.19	0.01	2.026	6.72	0.68	3.0	97.0	0.0	1.09	0.71	0.82	2.24	3.5	0.003	0.59	0.0	0.04	14.40	0.00	2.090	5.85	1.88	3.3	96.7	0.0	1.81	0.63	0.70	0.83	2.03	20752	2644	12	0	26	0	0	logfile
✔	8JEU	36196	2025-05-20	2023-05-16	3.5	4.02	3.58	3.9	0.002	0.52	0.0	0.04	15.90	0.00	2.202	6.95	0.17	5.0	94.7	0.3	-0.27	0.71	0.81	2.03	3.9	0.002	0.58	0.0	0.04	15.89	0.00	2.525	6.57	1.65	4.8	95.0	0.2	1.03	0.40	0.71	0.81	1.58	19438	2640	4	0	0	0	0	logfile
✘	8P2E	17362	2025-05-15	2023-05-16	3.2	4.02	3.25	3.7	0.018	1.79	0.0	0.09	10.29	0.01	1.972	5.06	0.14	1.9	97.7	0.4	1.22	0.82	0.72	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12786	1691	8	0	0	0	0	logfile
✔	8JEJ	36190	2025-05-12	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.36	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.007	1.44	0.0	0.06	17.88	0.01	1.804	5.87	2.26	4.0	96.0	0.0	0.69	0.24	0.69	0.88	4.71	8604	1089	5	0	6	0	0	logfile
✔	8JEX	36202	2025-05-09	2023-05-16	3.1	3.05	2.73	3.3	0.012	2.00	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.003	0.52	0.0	0.05	13.90	0.00	2.619	1.17	3.42	1.9	98.1	0.0	-3.00	0.94	0.46	0.86	3.07	2616	330	18	0	60	0	0	logfile
✔	8P2Z	17380	2025-05-10	2023-05-16	3.5	3.69	3.42	3.7	0.004	0.63	0.0	0.04	14.81	0.01	2.219	7.40	0.42	2.7	97.3	0.0	1.32	0.54	0.79	2.49	3.7	0.003	0.54	0.0	0.04	15.38	0.00	2.631	5.23	3.57	2.7	97.3	0.0	2.59	0.40	0.53	0.79	2.10	4641	603	4	0	3	0	0	logfile
✔	8JEK	36191	2025-05-12	2023-05-16	2.7	2.98	2.74	3.0	0.031	1.35	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.010	1.47	0.0	0.06	17.05	0.01	1.789	6.32	2.48	5.3	94.6	0.1	0.34	0.90	0.71	0.88	4.19	8623	1089	5	0	6	0	0	logfile
✔	8JF0	36205	2025-05-10	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.84	0.0	0.05	15.44	0.00	2.421	13.82	2.96	2.2	97.8	0.0	0.99	1.49	0.72	0.75	1.54	6578	872	2	0	0	0	0	logfile
✔	8JEV	36200	2025-05-18	2023-05-16	3.06	3.54	3.27	3.5	0.007	0.73	0.0	0.04	14.19	0.01	1.812	14.57	0.00	5.3	94.6	0.2	-0.33	0.55	0.72	2.59	3.5	0.003	0.58	0.0	0.04	15.85	0.00	2.395	4.99	1.10	2.9	97.1	0.0	1.33	1.56	0.49	0.69	1.95	17598	1112	6	0	6	2	8852	logfile
✔	8JE2	36183	2025-05-15	2023-05-15	3.63	4.61	3.86	3.9	0.006	0.71	1.0	0.05	12.66	0.00	2.215	13.17	0.39	2.8	97.2	0.1	1.29	0.82	0.79	1.08	3.9	0.003	0.63	0.0	0.04	14.28	0.00	2.035	12.09	0.58	3.4	96.5	0.1	1.80	0.95	0.83	0.83	1.31	9271	1147	6	0	1	0	0	logfile
✔	8JEC	36185	2025-05-20	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.003	0.59	0.0	0.04	12.55	0.00	2.451	5.81	1.53	4.2	95.7	0.1	1.75	0.46	0.72	0.84	1.71	19680	2632	4	0	0	0	0	logfile
✔	8SV1	40781	2025-05-10	2023-05-15	3.5	3.48	2.74	3.8	0.003	0.75	0.0	0.05	16.02	0.01	2.219	10.35	0.70	6.2	93.4	0.4	-1.32	0.52	0.70	1.98	3.8	0.003	0.78	0.0	0.05	17.70	0.00	2.381	12.18	4.04	5.0	95.0	0.0	-1.45	0.73	0.47	0.69	1.86	6330	792	6	0	0	0	0	logfile
✘	8JE1	36182	2025-05-23	2023-05-15	3.95	5.03	3.95	3.9	0.005	0.90	0.0	0.05	15.83	0.01	2.228	17.27	0.88	5.3	94.5	0.1	-1.50	0.83	0.75	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17507	2165	10	0	1	0	0	logfile
✔	8P2D	17361	2025-05-12	2023-05-15	2.59	2.21	2.60	2.0	0.002	0.51	0.0	0.04	12.79	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.67	0.0	0.05	16.04	0.00	1.979	12.74	2.66	8.1	91.9	0.0	-1.48	1.30	0.73	0.68	1.72	8793	1087	4	0	4	0	0	logfile
✔	8JEF	36186	2025-05-12	2023-05-15	2.96	3.46	3.06	3.3	0.007	1.64	23.0	0.09	13.88	0.01	1.435	10.40	1.89	5.6	94.0	0.5	-0.30	0.66	0.84	3.06	3.3	0.003	0.65	0.0	0.04	15.89	0.00	2.511	4.67	1.78	5.8	94.2	0.0	-0.01	0.48	0.68	0.87	2.90	8615	1125	6	0	1	0	0	logfile
✔	8SV8	40782	2025-05-13	2023-05-15	3.38	3.59	—	3.5	0.004	0.72	0.0	0.04	16.38	0.01	2.199	10.96	0.54	5.5	94.4	0.1	-0.43	0.82	0.85	1.72	3.5	0.005	0.65	0.0	0.04	17.08	0.00	2.361	8.65	2.54	5.3	94.6	0.1	0.06	0.96	0.83	0.88	1.68	10208	1299	5	0	1	0	0	logfile

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