Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JEC	36185	2025-05-20	2023-05-15	3.1	3.61	3.15	3.5	0.002	0.40	0.0	0.04	9.75	0.00	2.196	4.85	1.03	4.1	95.8	0.1	0.28	0.70	0.82	2.48	3.5	0.003	0.59	0.0	0.04	12.55	0.00	2.451	5.81	1.53	4.2	95.7	0.1	1.75	0.46	0.72	0.84	1.71	19680	2632	4	0	0	0	0	logfile
✔	8SV1	40781	2025-05-10	2023-05-15	3.5	3.48	2.74	3.8	0.003	0.75	0.0	0.05	16.02	0.01	2.219	10.35	0.70	6.2	93.4	0.4	-1.32	0.52	0.70	1.98	3.8	0.003	0.78	0.0	0.05	17.70	0.00	2.381	12.18	4.04	5.0	95.0	0.0	-1.45	0.73	0.47	0.69	1.86	6330	792	6	0	0	0	0	logfile
✔	8P28	17359	2025-05-21	2023-05-15	2.77	2.35	2.79	2.1	0.008	0.64	0.0	0.05	13.73	0.00	1.795	6.79	2.15	10.0	89.8	0.2	-1.36	0.78	0.77	3.56	2.1	0.003	0.68	1.0	0.04	15.98	0.00	1.933	6.24	2.68	6.3	93.7	0.0	-0.39	0.97	0.80	0.79	2.79	21141	2584	8	0	16	0	0	logfile
✔	8P23	17357	2025-05-14	2023-05-14	3.17	2.45	3.19	2.2	0.004	0.69	2.0	0.05	13.20	0.01	2.090	5.91	4.71	5.8	93.7	0.5	-0.94	0.75	0.75	3.06	2.2	0.004	0.72	0.0	0.04	15.73	0.00	2.111	6.13	4.38	6.8	92.8	0.4	-0.53	0.54	0.78	0.79	2.79	11399	1401	4	0	6	0	0	logfile
✘	8JDA	36076	2025-05-10	2023-05-13	3.67	3.84	3.39	3.8	0.004	0.78	0.0	0.04	14.02	0.00	2.176	14.34	0.14	5.7	94.2	0.1	-1.44	0.58	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6526	848	2	0	0	0	0	logfile
✔	8SUR	40776	2025-05-22	2023-05-13	3.1	3.44	3.20	3.4	0.007	0.86	8.0	0.08	14.51	0.01	1.256	7.20	0.65	3.9	95.7	0.4	1.04	0.57	0.79	3.03	3.4	0.003	0.54	1.0	0.04	15.05	0.00	2.150	4.35	1.30	3.9	96.0	0.1	1.44	1.04	0.56	0.83	3.06	23085	1417	6	0	15	0	11381	logfile
✔	8SUX	40779	2025-05-19	2023-05-13	2.93	3.14	2.96	3.2	0.003	0.53	0.0	0.04	15.61	0.00	2.166	3.82	0.00	4.0	96.0	0.0	-0.31	0.56	0.70	2.87	3.2	0.002	0.57	0.0	0.04	18.13	0.00	2.555	4.04	1.80	3.4	96.6	0.0	-0.07	0.50	0.66	0.80	2.18	18101	2231	10	0	4	0	0	logfile
✔	8JD9	36077	2025-05-16	2023-05-13	2.87	3.05	2.89	3.1	0.002	0.56	0.0	0.04	13.88	0.01	2.162	9.02	0.06	5.2	94.4	0.3	1.03	0.64	0.78	1.95	3.1	0.003	0.63	0.0	0.04	16.60	0.01	2.347	10.42	1.24	4.6	95.1	0.3	1.26	1.58	0.65	0.80	1.37	14725	1870	3	0	2	0	0	logfile
✔	8SUN	40768	2025-05-22	2023-05-12	3.12	3.51	3.31	3.5	0.009	0.83	1.0	0.06	14.22	0.00	1.130	8.68	0.40	4.6	95.3	0.1	0.78	0.58	0.76	2.16	3.5	0.003	0.53	1.0	0.04	15.22	0.00	2.164	4.89	0.88	3.7	96.3	0.0	1.22	0.95	0.59	0.79	2.20	23420	1442	4	0	10	0	11544	logfile
✔	8JD6	36177	2025-05-18	2023-05-12	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.11	0.00	2.218	12.40	0.35	5.9	94.0	0.0	-0.74	0.62	0.65	0.86	3.4	0.004	0.68	0.0	0.04	15.94	0.00	2.348	13.89	4.44	7.9	92.1	0.0	-1.12	1.58	0.67	0.74	1.35	17192	2312	8	0	1	0	0	logfile
✔	8JD1	36172	2025-05-13	2023-05-12	3.7	3.87	3.62	3.8	0.002	0.50	0.0	0.04	12.60	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.003	0.63	0.0	0.04	14.43	0.00	2.562	9.06	1.81	6.8	93.1	0.1	-0.41	1.20	0.65	0.68	1.54	10766	1508	5	0	7	0	0	logfile
✔	8JD3	36174	2025-05-17	2023-05-12	3.3	3.50	3.27	3.5	0.004	0.53	0.0	0.10	13.40	0.00	2.210	6.60	0.13	4.0	96.0	0.0	-0.23	0.62	0.64	1.75	3.5	0.003	0.62	0.0	0.04	14.79	0.00	2.482	6.50	1.80	4.8	95.2	0.0	-0.34	0.50	0.67	0.71	1.91	15770	2148	8	0	5	0	0	logfile
✔	8JD5	36176	2025-05-19	2023-05-12	3.6	3.48	—	3.5	0.005	0.65	1.0	0.04	14.13	0.00	2.201	9.27	0.39	6.7	93.2	0.1	-0.84	0.62	0.68	1.58	3.5	0.003	0.65	0.0	0.04	15.05	0.00	2.498	8.28	2.63	7.6	92.4	0.0	-0.74	0.58	0.69	0.73	1.50	18028	2389	8	0	10	0	0	logfile
✔	8P1M	17354	2025-05-21	2023-05-12	3.23	3.48	3.22	3.5	0.003	0.54	0.0	0.04	14.93	0.00	1.946	8.09	0.00	7.1	92.6	0.3	-0.85	0.65	0.77	3.19	3.5	0.004	0.52	0.0	0.04	15.90	0.00	1.867	5.20	0.43	6.2	93.5	0.3	-0.42	0.32	0.61	0.77	2.64	21135	1298	3	5	3	0	10539	logfile
✔	8P1U	17356	2025-05-12	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.004	0.58	0.0	0.04	16.23	0.00	2.420	8.36	3.26	4.2	95.8	0.0	0.78	0.39	0.59	0.75	1.73	9149	1179	5	0	0	0	0	logfile
✔	8P1N	17355	2025-05-21	2023-05-12	2.79	3.13	2.94	3.2	0.003	0.52	0.0	0.04	12.88	0.00	2.037	4.87	0.00	3.9	96.0	0.1	-0.53	0.57	0.74	4.01	3.2	0.002	0.50	0.0	0.04	15.36	0.00	2.425	3.15	0.61	3.9	96.0	0.1	0.28	0.45	0.55	0.75	3.85	20875	1287	2	5	0	0	10405	logfile
✔	8JCV	36166	2025-05-13	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	14.87	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.003	0.62	0.0	0.04	14.79	0.00	2.493	7.71	1.51	5.3	94.7	0.0	0.62	0.52	0.69	0.78	1.77	10667	1514	4	0	4	0	0	logfile
✔	8P1K	17352	2025-05-15	2023-05-12	3.24	3.51	3.35	3.5	0.003	0.53	0.0	0.04	12.48	0.00	2.156	6.55	0.00	3.0	97.0	0.0	1.65	0.54	0.70	2.48	3.5	0.002	0.50	0.0	0.04	14.24	0.00	2.611	4.80	0.67	2.5	97.4	0.1	1.97	1.05	0.63	0.80	2.45	12261	1518	1	0	0	0	0	logfile
✔	8P1L	17353	2025-05-30	2023-05-12	3.3	3.88	19.66	3.8	0.003	0.53	0.0	0.04	13.71	0.00	1.879	8.17	0.00	6.9	92.5	0.5	-0.97	0.67	0.77	2.17	3.8	0.003	0.55	0.0	0.04	15.33	0.00	2.191	6.13	1.00	6.5	92.9	0.6	-0.21	2.83	0.67	0.78	1.93	32936	2036	1	0	0	0	16512	logfile
✔	8JCY	36169	2025-05-14	2023-05-12	2.9	3.07	2.88	3.1	0.003	0.53	0.0	0.17	12.99	0.00	2.200	6.04	0.00	4.2	95.8	0.0	0.76	0.64	0.71	2.52	3.1	0.002	0.54	0.0	0.04	13.08	0.00	2.500	4.34	1.53	4.2	95.8	0.0	0.78	0.36	0.63	0.71	2.00	10874	1525	4	0	11	0	0	logfile

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