Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JD1	36172	2025-05-13	2023-05-12	3.7	3.87	3.62	3.8	0.002	0.50	0.0	0.04	12.60	0.00	2.228	6.47	0.21	6.8	93.2	0.0	-0.72	0.66	0.71	1.21	3.8	0.003	0.63	0.0	0.04	14.43	0.00	2.562	9.06	1.81	6.8	93.1	0.1	-0.41	1.20	0.65	0.68	1.54	10766	1508	5	0	7	0	0	logfile
✔	8P1K	17352	2025-05-15	2023-05-12	3.24	3.51	3.35	3.5	0.003	0.53	0.0	0.04	12.48	0.00	2.156	6.55	0.00	3.0	97.0	0.0	1.65	0.54	0.70	2.48	3.5	0.002	0.50	0.0	0.04	14.24	0.00	2.611	4.80	0.67	2.5	97.4	0.1	1.97	1.05	0.63	0.80	2.45	12261	1518	1	0	0	0	0	logfile
✔	8P1L	17353	2025-05-30	2023-05-12	3.3	3.88	19.66	3.8	0.003	0.53	0.0	0.04	13.71	0.00	1.879	8.17	0.00	6.9	92.5	0.5	-0.97	0.67	0.77	2.17	3.8	0.003	0.55	0.0	0.04	15.33	0.00	2.191	6.13	1.00	6.5	92.9	0.6	-0.21	2.83	0.67	0.78	1.93	32936	2036	1	0	0	0	16512	logfile
✔	8P1U	17356	2025-05-12	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.004	0.58	0.0	0.04	16.23	0.00	2.420	8.36	3.26	4.2	95.8	0.0	0.78	0.39	0.59	0.75	1.73	9149	1179	5	0	0	0	0	logfile
✔	8JCD	36158	2025-05-13	2023-05-11	3.14	4.04	3.34	3.7	0.003	0.57	0.0	0.04	28.68	0.00	2.208	9.70	0.69	2.6	97.2	0.1	1.81	0.86	0.85	1.25	3.7	0.004	0.64	0.0	0.04	28.70	0.00	2.403	10.06	1.72	2.9	96.9	0.1	2.52	1.16	0.86	0.84	0.89	10506	704	10	240	0	0	0	logfile
✔	8P12	17343	2025-05-13	2023-05-11	3.21	3.94	3.16	3.4	0.008	1.11	0.0	0.05	15.14	0.01	2.114	17.30	0.09	3.9	96.1	0.0	-0.37	0.75	0.68	0.72	3.4	0.003	0.73	0.0	0.04	15.82	0.00	2.558	12.77	2.47	4.2	95.8	0.0	-0.13	1.35	0.76	0.69	0.84	10266	1316	6	0	0	0	0	logfile
✔	8JCC	36157	2025-05-13	2023-05-10	3.42	4.56	3.52	3.8	0.005	0.60	0.0	0.04	28.83	0.00	2.246	11.14	0.34	2.9	97.1	0.0	1.53	0.85	0.77	1.27	3.8	0.004	0.70	0.0	0.04	28.40	0.00	2.488	14.06	4.62	3.0	97.0	0.0	1.73	1.26	0.89	0.86	0.63	10358	707	10	232	0	0	0	logfile
✔	8JC9	36154	2025-05-23	2023-05-10	3.32	3.63	3.30	3.7	0.025	1.92	0.0	0.05	18.37	0.03	2.316	5.00	0.00	4.0	96.0	0.0	3.46	0.64	0.84	3.79	3.7	0.004	0.68	0.0	0.04	16.57	0.00	2.244	5.00	0.17	3.4	96.6	0.0	4.08	0.27	0.66	0.87	3.12	13411	1307	56	0	70	0	0	logfile
✔	8JC0	36149	2025-05-10	2023-05-10	3.4	3.92	3.62	3.9	0.003	0.65	0.0	0.04	15.87	0.00	2.236	7.32	0.00	5.3	94.7	0.0	-1.74	0.35	0.55	1.77	3.9	0.003	0.60	0.0	0.04	16.47	0.00	2.531	4.98	3.06	6.3	93.7	0.0	-0.75	0.33	0.56	0.75	1.49	4691	589	9	0	1	0	0	logfile
✔	8JC8	36151	2025-05-24	2023-05-10	3.11	3.42	3.10	3.4	0.027	1.92	0.0	0.06	19.25	0.03	1.981	8.12	0.57	2.8	97.2	0.0	3.49	0.70	0.86	4.08	3.4	0.004	0.66	0.0	0.04	16.32	0.00	2.287	5.60	1.05	2.8	97.2	0.0	4.49	0.31	0.69	0.87	4.15	14456	1398	60	0	75	0	0	logfile
✔	8P0U	17338	2025-05-13	2023-05-10	2.92	3.55	2.99	2.9	0.002	0.46	0.0	0.04	17.81	0.00	1.895	5.14	3.00	2.5	97.5	0.1	0.72	0.92	0.87	3.28	3.0	0.003	0.58	0.0	0.04	17.76	0.00	2.032	7.13	1.46	2.2	97.8	0.0	1.13	0.99	0.93	0.91	3.23	10912	1310	6	18	1	0	0	logfile
✔	8P0A	17331	2025-05-10	2023-05-10	3.67	3.86	3.70	3.9	0.003	0.65	0.0	0.05	16.31	0.00	2.036	19.63	0.00	5.7	94.3	0.0	-1.96	0.67	0.69	1.79	3.9	0.003	0.75	0.0	0.05	17.53	0.00	1.943	17.21	2.59	6.8	93.2	0.0	-1.41	0.46	0.67	0.69	1.18	5764	718	5	0	4	0	0	logfile
✔	8P0G	17333	2025-05-14	2023-05-10	3.17	3.78	3.18	3.2	0.002	0.42	0.0	0.04	16.06	0.00	1.965	5.02	0.17	3.7	96.2	0.1	0.93	0.91	0.84	2.75	3.3	0.003	0.55	0.0	0.04	17.03	0.00	2.015	6.26	2.06	4.4	95.6	0.0	0.93	0.62	0.92	0.89	2.74	11331	1356	6	19	1	0	0	logfile
✔	8oZE	17306	2025-05-16	2023-05-09	2.91	3.20	3.05	3.2	0.003	0.55	0.0	0.04	17.98	0.00	2.128	9.17	0.00	6.7	93.0	0.3	-0.72	0.72	0.77	2.73	3.2	0.003	0.61	0.0	0.04	19.33	0.00	2.507	8.79	1.77	5.5	94.2	0.3	-0.27	0.43	0.68	0.77	2.37	13434	1448	8	74	0	0	0	logfile
✔	8oZF	17307	2025-05-30	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	16.97	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.8	0.004	0.70	0.0	0.04	18.22	0.00	2.460	13.42	1.88	5.1	94.6	0.3	-0.50	0.62	0.73	0.74	0.63	32076	3564	18	136	2	0	0	logfile
✔	8oZi	17310	2025-05-30	2023-05-09	3.22	3.45	3.31	3.4	0.005	0.77	0.0	0.14	17.64	0.00	2.121	10.71	0.00	4.8	94.7	0.5	-0.91	0.70	0.77	1.97	3.4	0.003	0.62	0.0	0.04	18.50	0.00	2.401	9.45	1.85	5.0	94.8	0.2	-0.51	0.47	0.70	0.79	1.92	32092	3564	18	136	2	0	0	logfile
✔	8oZD	17305	2025-05-18	2023-05-09	3.89	4.28	3.79	4.0	0.003	0.59	0.0	0.04	16.89	0.00	2.178	13.09	0.00	4.7	94.8	0.5	-0.29	0.77	0.74	0.95	4.0	0.004	0.74	0.0	0.04	18.37	0.00	2.453	14.69	2.07	5.8	94.0	0.2	-0.37	1.48	0.78	0.77	0.70	16001	1782	8	68	0	0	0	logfile
✔	8oZN	17315	2025-05-11	2023-05-09	3.5	3.24	3.30	3.4	0.015	2.02	0.0	0.09	15.49	0.01	2.254	3.77	0.12	8.5	91.5	0.0	-4.62	0.35	0.74	3.20	3.4	0.002	0.61	0.0	0.04	16.90	0.00	2.599	2.29	1.50	2.4	97.6	0.0	1.55	1.23	0.48	0.84	2.24	8030	1048	6	0	0	0	0	logfile
✔	8oZG	17308	2025-05-30	2023-05-09	3.37	3.80	3.72	3.8	0.006	0.73	0.0	0.04	17.23	0.01	2.177	12.91	0.03	5.2	94.5	0.3	-0.80	0.67	0.76	1.57	3.8	0.006	0.72	0.0	0.04	18.55	0.01	2.419	13.12	2.53	6.3	93.5	0.2	-0.62	1.32	0.68	0.79	1.63	32077	3564	18	136	3	0	0	logfile
✔	8JBX	36148	2025-05-14	2023-05-09	3.35	4.24	3.63	3.8	0.004	0.58	0.0	0.03	28.65	0.00	2.242	10.38	0.48	3.1	96.9	0.0	1.72	0.90	0.87	1.03	3.9	0.004	0.66	0.0	0.03	28.91	0.00	2.395	10.47	3.35	4.1	95.9	0.0	1.95	1.17	0.89	0.87	1.23	11881	750	10	290	0	0	0	logfile

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