Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oZF	17307	2025-05-30	2023-05-09	3.73	4.14	3.95	3.8	0.006	0.75	0.0	0.04	16.97	0.01	2.112	13.75	0.00	4.9	94.8	0.4	-0.84	0.72	0.71	0.70	3.8	0.004	0.70	0.0	0.04	18.22	0.00	2.460	13.42	1.88	5.1	94.6	0.3	-0.50	0.62	0.73	0.74	0.63	32076	3564	18	136	2	0	0	logfile
✔	8oZi	17310	2025-05-30	2023-05-09	3.22	3.45	3.31	3.4	0.005	0.77	0.0	0.14	17.64	0.00	2.121	10.71	0.00	4.8	94.7	0.5	-0.91	0.70	0.77	1.97	3.4	0.003	0.62	0.0	0.04	18.50	0.00	2.401	9.45	1.85	5.0	94.8	0.2	-0.51	0.47	0.70	0.79	1.92	32092	3564	18	136	2	0	0	logfile
✔	8JBX	36148	2025-05-14	2023-05-09	3.35	4.24	3.63	3.8	0.004	0.58	0.0	0.03	28.65	0.00	2.242	10.38	0.48	3.1	96.9	0.0	1.72	0.90	0.87	1.03	3.9	0.004	0.66	0.0	0.03	28.91	0.00	2.395	10.47	3.35	4.1	95.9	0.0	1.95	1.17	0.89	0.87	1.23	11881	750	10	290	0	0	0	logfile
✔	8oZN	17315	2025-05-11	2023-05-09	3.5	3.24	3.30	3.4	0.015	2.02	0.0	0.09	15.49	0.01	2.254	3.77	0.12	8.5	91.5	0.0	-4.62	0.35	0.74	3.20	3.4	0.002	0.61	0.0	0.04	16.90	0.00	2.599	2.29	1.50	2.4	97.6	0.0	1.55	1.23	0.48	0.84	2.24	8030	1048	6	0	0	0	0	logfile
✔	8oZG	17308	2025-05-30	2023-05-09	3.37	3.80	3.72	3.8	0.006	0.73	0.0	0.04	17.23	0.01	2.177	12.91	0.03	5.2	94.5	0.3	-0.80	0.67	0.76	1.57	3.8	0.006	0.72	0.0	0.04	18.55	0.01	2.419	13.12	2.53	6.3	93.5	0.2	-0.62	1.32	0.68	0.79	1.63	32077	3564	18	136	3	0	0	logfile
✔	8JBV	36147	2025-05-10	2023-05-09	3.02	3.16	2.97	3.2	0.008	1.12	1.0	0.06	18.53	0.01	2.235	4.61	14.93	12.5	87.5	0.0	-3.31	0.72	0.75	3.18	3.1	0.004	0.70	0.0	0.05	16.26	0.01	2.347	6.95	5.33	9.0	91.0	0.0	-1.91	1.74	0.72	0.78	3.00	6624	824	4	0	0	0	0	logfile
✔	8SS7	40746	2025-05-20	2023-05-08	2.76	2.92	2.77	3.0	0.022	1.64	0.0	0.36	22.55	0.01	2.252	6.95	1.45	5.7	93.8	0.5	-5.34	0.68	0.77	4.16	3.0	0.003	1.04	0.0	0.09	19.78	0.00	2.519	8.55	2.33	4.4	95.4	0.2	0.98	3.76	0.73	0.83	3.08	19437	2266	12	0	46	0	0	logfile
✔	8JBE	36143	2025-05-14	2023-05-08	3.25	3.61	3.37	3.5	0.003	0.58	0.0	0.04	14.01	0.00	2.209	6.39	0.40	5.7	93.9	0.4	-0.14	0.77	0.83	2.87	3.5	0.003	0.56	0.0	0.04	15.66	0.00	2.529	4.76	1.51	4.8	95.0	0.1	0.48	0.38	0.79	0.85	2.49	11260	1400	3	0	0	0	0	logfile
✔	8SS4	40743	2025-05-19	2023-05-08	3.3	3.54	3.39	3.5	0.009	1.23	0.0	0.06	10.77	0.01	2.238	3.21	0.36	8.5	91.2	0.4	-5.98	0.61	0.78	3.04	3.5	0.003	0.67	0.0	0.04	14.25	0.00	2.525	7.27	2.53	6.7	93.1	0.2	-0.16	1.22	0.63	0.78	2.11	17978	2278	7	0	1	0	0	logfile
✔	8SS3	40742	2025-05-21	2023-05-08	3.21	3.40	3.29	3.4	0.047	1.90	0.0	0.69	28.24	0.01	2.123	11.20	0.52	7.6	91.7	0.7	-6.01	0.62	0.80	3.60	3.4	0.004	1.27	0.0	0.14	21.85	0.00	2.376	7.79	2.63	6.9	92.8	0.3	0.34	1.31	0.65	0.87	3.12	19887	2280	12	0	65	0	0	logfile
✔	8JBG	36145	2025-05-12	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.004	0.92	1.0	0.05	17.67	0.00	2.350	8.53	4.03	4.6	95.4	0.1	0.59	0.32	0.65	0.84	3.10	8750	1139	6	0	0	0	0	logfile
✔	8SS2	40741	2025-05-29	2023-05-08	3.58	3.90	3.68	3.9	0.025	1.64	0.0	0.36	18.88	0.01	2.176	7.42	0.80	15.0	84.3	0.7	-5.79	0.75	0.82	2.74	3.9	0.004	1.01	1.0	0.08	17.51	0.00	2.323	10.22	2.09	10.8	89.0	0.2	-1.75	1.37	0.74	0.82	1.88	31146	3802	12	0	35	0	0	logfile
✔	8SS5	40744	2025-05-17	2023-05-08	3.56	3.87	3.72	3.8	0.006	1.23	0.0	0.06	11.20	0.01	2.218	3.90	0.24	10.6	88.3	1.1	-5.78	0.57	0.74	2.01	3.8	0.003	0.72	0.0	0.04	15.03	0.01	2.479	9.90	1.96	9.8	90.0	0.3	-1.17	2.42	0.62	0.76	1.58	15637	1998	5	0	1	0	0	logfile
✔	8JB5	36141	2025-05-20	2023-05-08	2.9	2.97	2.93	2.9	0.008	0.88	2.0	0.06	17.40	0.01	1.925	14.17	6.34	5.7	94.0	0.3	-1.73	0.68	0.81	2.82	2.9	0.004	0.61	0.0	0.05	17.74	0.00	2.061	5.98	2.77	4.6	95.3	0.0	0.47	1.22	0.69	0.87	2.70	19027	2355	2	0	1	0	0	logfile
✔	8SSB	40750	2025-05-20	2023-05-08	3.66	3.93	3.74	3.9	0.009	1.55	0.0	0.06	17.48	0.01	2.258	7.33	0.72	11.4	87.4	1.2	-5.92	0.67	0.77	1.98	3.8	0.004	0.90	1.0	0.05	17.42	0.00	2.366	15.56	3.01	10.2	89.8	0.0	-1.10	3.74	0.70	0.80	1.51	19048	2304	12	0	29	0	0	logfile
✔	8SS9	40748	2025-05-18	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.004	0.82	0.0	0.06	18.61	0.00	2.428	7.89	2.21	4.1	95.9	0.0	0.73	3.75	0.69	0.82	3.17	16319	1986	12	0	26	15	0	logfile
✔	8SSA	40749	2025-05-28	2023-05-08	3.88	4.18	3.96	4.1	0.010	1.32	0.0	0.06	14.93	0.01	2.213	6.33	1.00	11.4	87.6	1.0	-5.19	0.70	0.77	2.06	4.1	0.003	0.81	0.0	0.04	16.47	0.00	2.450	13.65	2.25	9.4	90.4	0.1	-1.16	1.28	0.69	0.73	1.40	30888	3840	10	0	13	0	0	logfile
✔	8JBF	36144	2025-05-12	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.004	0.67	0.0	0.04	15.27	0.00	2.500	8.23	2.52	3.9	96.1	0.0	-0.76	0.44	0.78	0.80	3.72	8784	1145	6	0	0	0	0	logfile
✔	8SS6	40745	2025-05-29	2023-05-08	3.01	3.32	3.16	3.3	0.017	1.38	0.0	0.28	19.01	0.01	2.303	4.80	1.05	7.9	91.7	0.4	-5.47	0.68	0.76	3.98	3.3	0.003	0.88	0.0	0.07	17.94	0.00	2.387	7.40	2.06	6.3	93.7	0.1	-0.02	1.49	0.67	0.79	2.81	31609	3794	12	0	46	0	0	logfile
✔	8SS8	40747	2025-05-27	2023-05-08	2.81	3.02	2.87	3.0	0.016	1.43	0.0	0.18	15.64	0.01	2.255	3.89	1.33	7.1	92.2	0.7	-4.85	0.72	0.81	3.89	3.0	0.003	0.75	0.0	0.05	16.63	0.00	2.487	7.53	1.90	5.5	94.4	0.1	0.15	1.14	0.75	0.83	3.14	28487	3514	12	0	26	11	0	logfile

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