Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JBG	36145	2025-05-12	2023-05-08	2.8	2.88	2.76	2.9	0.002	0.54	0.0	0.04	17.54	0.00	2.106	9.23	4.36	3.9	96.1	0.0	-0.10	0.67	0.82	2.97	2.9	0.004	0.92	1.0	0.05	17.67	0.00	2.350	8.53	4.03	4.6	95.4	0.1	0.59	0.32	0.65	0.84	3.10	8750	1139	6	0	0	0	0	logfile
✔	8JAR	36132	2025-05-19	2023-05-07	3.3	3.63	3.35	3.6	0.004	0.54	0.0	0.04	14.40	0.00	2.172	7.43	0.00	3.4	96.6	0.0	-0.87	0.74	0.81	2.67	3.6	0.003	0.54	0.0	0.04	16.68	0.00	2.390	9.04	1.70	3.3	96.7	0.0	0.52	0.42	0.74	0.86	2.27	16841	2071	11	0	1	0	0	logfile
✔	8JAY	36138	2025-05-29	2023-05-07	4.2	4.39	4.16	4.2	0.003	0.65	0.0	0.04	17.45	0.00	1.999	13.83	0.00	7.6	92.4	0.0	-1.79	0.76	0.75	—	4.2	0.003	0.67	0.0	0.04	17.54	0.00	1.924	10.98	0.03	8.1	91.8	0.0	-1.73	0.39	0.76	0.76	—	31982	3481	20	166	4	0	0	logfile
✔	8JAU	36134	2025-05-19	2023-05-07	3.22	3.52	3.25	3.6	0.004	0.52	0.0	0.04	14.40	0.00	2.183	7.18	0.05	4.0	96.0	0.0	-0.99	0.70	0.75	3.31	3.6	0.003	0.75	1.0	0.04	16.52	0.00	1.855	8.63	1.03	4.2	95.8	0.0	0.75	0.41	0.70	0.84	2.47	17064	2096	11	0	1	0	0	logfile
✔	8JB0	36139	2025-05-28	2023-05-07	4.2	4.12	4.24	3.8	0.003	0.62	0.0	0.04	16.01	0.00	2.196	13.62	0.09	2.8	97.0	0.2	2.31	0.76	0.79	—	3.8	0.004	0.65	0.0	0.04	16.44	0.00	2.302	10.89	0.06	3.3	96.5	0.2	2.25	0.55	0.77	0.82	—	31387	3858	48	0	36	0	0	logfile
✔	8JAX	36137	2025-05-28	2023-05-07	3.27	3.67	3.22	3.4	0.010	0.83	0.0	0.04	18.67	0.00	1.139	7.77	0.36	2.4	97.4	0.2	3.04	0.82	0.90	1.34	3.4	0.008	0.67	0.0	0.03	19.02	0.00	2.141	7.21	2.00	2.7	97.2	0.2	3.82	0.30	0.83	0.90	1.25	31889	3858	48	0	36	0	0	logfile
✔	8JAL	36129	2025-05-19	2023-05-06	3.3	3.48	3.27	3.4	0.003	0.63	0.0	0.04	14.49	0.00	2.255	7.12	0.00	3.2	96.8	0.0	-1.29	0.71	0.77	2.72	3.4	0.004	0.59	0.0	0.04	16.57	0.00	2.500	9.45	1.28	3.6	96.4	0.0	0.82	0.49	0.77	0.88	2.26	17226	2115	11	0	1	0	0	logfile
✔	8JAG	36113	2025-05-13	2023-05-06	3.55	3.73	3.60	3.7	0.020	1.82	2.0	0.11	12.74	0.01	1.641	1.92	0.00	3.3	96.5	0.2	0.24	0.55	0.73	2.75	3.7	0.003	0.71	0.0	0.05	14.73	0.00	2.463	7.32	2.88	4.3	95.4	0.3	-0.06	0.87	0.54	0.73	2.26	9772	1244	4	0	5	0	0	logfile
✔	8SRS	40740	2025-05-16	2023-05-06	2.79	3.33	2.87	3.1	0.004	0.83	0.0	0.05	19.79	0.01	2.029	3.26	0.58	3.0	97.0	0.0	-1.01	0.82	0.89	3.34	3.1	0.003	0.52	0.0	0.04	19.71	0.00	1.896	4.67	1.41	2.9	97.1	0.0	0.70	0.96	0.83	0.90	3.55	14148	1341	7	149	4	1	0	logfile
✔	8SR5	40720	2025-05-29	2023-05-05	3.22	3.44	3.27	3.4	0.006	0.78	0.0	0.05	13.26	0.00	1.949	13.27	0.77	5.8	93.8	0.4	0.25	0.64	0.82	2.68	3.4	0.003	0.61	0.0	0.04	15.23	0.00	2.068	7.58	1.64	4.9	95.0	0.1	0.60	0.77	0.72	0.89	2.42	18588	2310	12	0	6	0	0	logfile
✔	8JA7	36125	2025-05-15	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.61	0.0	0.04	14.87	0.00	2.477	8.71	1.20	3.8	96.2	0.0	-0.28	0.96	0.69	0.87	1.78	13601	1784	6	0	2	0	0	logfile
✔	8JA0	36123	2025-05-15	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.005	0.70	0.0	0.04	20.61	0.00	2.484	9.65	1.85	8.0	91.6	0.4	-0.78	0.34	0.74	0.81	1.37	11291	1114	3	115	0	0	0	logfile
✔	8SRK	40734	2025-05-26	2023-05-05	4.14	4.66	3.94	4.1	0.008	1.23	4.0	0.07	14.14	0.01	2.029	4.08	0.50	3.1	96.9	0.0	-5.16	0.70	0.80	—	4.1	0.004	0.62	0.0	0.04	11.69	0.00	2.289	4.97	0.00	2.1	97.9	0.0	2.94	0.52	0.71	0.82	—	27328	4284	8	0	24	0	0	logfile
✔	8J9W	36117	2025-05-16	2023-05-05	2.76	3.63	2.76	3.1	0.005	0.84	3.0	0.05	18.06	0.01	2.175	8.03	0.07	4.3	95.7	0.0	-1.21	0.88	0.80	1.55	3.1	0.003	0.70	0.0	0.04	18.13	0.00	2.321	9.91	1.47	4.7	95.2	0.1	0.09	1.95	0.89	0.81	1.61	13841	1550	9	60	4	0	0	logfile
✔	8SRP	40737	2025-05-12	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	8oYU	17296	2025-05-28	2023-05-05	4.0	2.53	3.78	3.2	0.007	0.80	1.0	0.05	16.41	0.00	2.147	13.47	0.23	5.7	94.0	0.3	-0.68	0.69	0.56	—	2.5	0.003	0.77	0.0	0.05	16.72	0.00	2.367	12.63	2.72	6.2	93.5	0.3	-1.37	1.03	0.70	0.59	—	28223	3544	19	0	37	0	0	logfile
✔	8J9Z	36120	2025-05-14	2023-05-05	3.13	3.40	3.18	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.003	0.46	0.0	0.04	17.20	0.00	2.503	3.54	2.29	2.2	97.8	0.0	1.08	0.26	0.72	0.85	3.02	12154	1494	2	0	0	0	0	logfile
✔	8SRM	40735	2025-05-10	2023-05-05	4.46	5.07	4.46	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.005	0.58	0.0	0.04	4.91	0.00	2.443	1.68	0.00	6.4	93.6	0.0	1.00	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8JAF	36126	2025-05-09	2023-05-05	3.1	2.18	3.06	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.003	0.68	0.0	0.04	13.69	0.01	2.348	8.09	1.74	4.8	95.2	0.0	-1.30	0.92	0.66	0.57	2.41	3862	549	4	0	0	0	0	logfile
✔	8oYT	17295	2025-05-29	2023-05-05	3.8	2.45	3.69	3.6	0.004	0.95	0.0	0.06	16.96	0.01	2.086	19.30	0.25	6.9	92.6	0.5	-0.89	0.72	0.56	0.35	2.4	0.004	0.85	0.0	0.05	17.15	0.01	2.315	16.73	3.48	8.3	91.4	0.3	-1.89	1.04	0.73	0.61	0.61	29178	3675	21	0	33	0	0	logfile

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