Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JA7	36125	2025-05-15	2023-05-05	3.02	3.83	3.16	3.5	0.004	0.63	0.0	0.04	13.42	0.00	2.158	15.41	0.00	4.8	95.2	0.0	-3.10	0.71	0.86	2.48	3.5	0.003	0.61	0.0	0.04	14.87	0.00	2.477	8.71	1.20	3.8	96.2	0.0	-0.28	0.96	0.69	0.87	1.78	13601	1784	6	0	2	0	0	logfile
✔	8SRJ	40733	2025-05-25	2023-05-05	3.74	4.47	3.77	3.9	0.008	1.12	4.0	0.06	10.70	0.01	2.470	1.74	0.69	2.9	97.1	0.0	-5.59	0.71	0.80	2.89	3.9	0.006	0.66	0.0	0.04	10.67	0.00	2.625	3.75	2.66	2.3	97.7	0.0	3.11	0.59	0.72	0.84	3.02	26156	4296	8	0	12	0	0	logfile
✔	8oYT	17295	2025-05-29	2023-05-05	3.8	2.45	3.69	3.6	0.004	0.95	0.0	0.06	16.96	0.01	2.086	19.30	0.25	6.9	92.6	0.5	-0.89	0.72	0.56	0.35	2.4	0.004	0.85	0.0	0.05	17.15	0.01	2.315	16.73	3.48	8.3	91.4	0.3	-1.89	1.04	0.73	0.61	0.61	29178	3675	21	0	33	0	0	logfile
✔	8JA0	36123	2025-05-15	2023-05-05	3.52	3.71	3.53	3.6	0.002	0.57	0.0	0.04	20.78	0.00	2.187	9.41	0.00	5.6	93.7	0.6	-0.68	0.73	0.79	1.35	3.6	0.005	0.70	0.0	0.04	20.61	0.00	2.484	9.65	1.85	8.0	91.6	0.4	-0.78	0.34	0.74	0.81	1.37	11291	1114	3	115	0	0	0	logfile
✔	8J9W	36117	2025-05-16	2023-05-05	2.76	3.63	2.76	3.1	0.005	0.84	3.0	0.05	18.06	0.01	2.175	8.03	0.07	4.3	95.7	0.0	-1.21	0.88	0.80	1.55	3.1	0.003	0.70	0.0	0.04	18.13	0.00	2.321	9.91	1.47	4.7	95.2	0.1	0.09	1.95	0.89	0.81	1.61	13841	1550	9	60	4	0	0	logfile
✔	8SRP	40737	2025-05-12	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	8J9o	36112	2025-05-11	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.69	0.0	0.04	15.87	0.00	2.115	9.54	5.16	6.3	93.7	0.0	-0.80	0.47	0.75	0.75	1.87	7441	999	4	0	0	0	0	logfile
✔	8SQL	40709	2025-05-14	2023-05-04	3.1	3.40	3.17	3.5	0.005	0.75	0.0	0.04	14.01	0.00	1.781	7.73	0.16	3.0	97.0	0.0	0.23	0.65	0.80	3.07	3.4	0.004	0.64	0.0	0.04	15.92	0.00	2.366	7.29	1.56	2.7	97.3	0.0	1.60	1.15	0.57	0.77	1.78	11218	1396	3	0	15	0	0	logfile
✔	8J9P	36114	2025-05-17	2023-05-04	3.4	4.20	3.32	3.8	0.003	0.62	0.0	0.04	19.68	0.00	2.020	10.67	0.26	7.0	93.0	0.0	-1.61	0.86	0.82	1.76	3.8	0.003	0.64	0.0	0.04	19.83	0.00	1.976	8.05	4.82	7.4	92.6	0.0	-1.46	1.10	0.86	0.82	1.64	16013	1743	10	83	2	0	0	logfile
✔	8SQB	40701	2025-05-15	2023-05-04	3.8	4.16	3.89	4.1	0.008	0.84	0.0	0.05	14.86	0.00	1.936	33.89	1.02	19.3	80.6	0.1	-5.64	0.69	0.70	1.35	4.0	0.003	0.77	0.0	0.05	16.80	0.00	2.388	11.83	3.86	10.2	89.8	0.0	-3.08	2.51	0.75	0.79	1.54	12991	1676	6	0	0	0	0	logfile
✘	8SQJ	40707	2025-05-25	2023-05-04	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26058	1486	17	85	3	139	12403	logfile
✔	8SQA	40700	2025-05-14	2023-05-04	4.2	4.55	4.26	4.3	0.007	0.81	0.0	0.05	14.35	0.00	2.058	26.55	0.39	18.8	81.2	0.1	-5.75	0.78	0.86	—	4.3	0.003	0.72	0.0	0.04	13.65	0.00	2.499	9.14	0.00	8.5	91.5	0.0	-2.32	1.62	0.77	0.83	—	12156	1563	6	0	0	0	0	logfile
✔	8SQH	40705	2025-05-16	2023-05-04	3.69	4.64	3.73	4.1	0.005	1.12	1.0	0.06	19.15	0.01	1.955	3.72	0.17	4.0	96.0	0.0	-1.51	0.91	0.86	2.12	4.1	0.004	0.60	0.0	0.04	19.38	0.00	1.895	8.36	1.41	3.6	96.4	0.0	0.93	1.92	0.92	0.88	1.67	14101	1341	7	147	4	0	0	logfile
✘	8SQK	40708	2025-05-24	2023-05-04	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25574	1487	16	70	3	131	12229	logfile
✔	8SQU	40713	2025-05-11	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.004	0.75	0.0	0.04	20.00	0.00	1.944	15.23	1.46	7.3	92.7	0.0	-0.54	2.16	0.79	0.70	0.93	7761	841	5	41	1	0	0	logfile
✔	8J9N	36111	2025-05-11	2023-05-04	3.5	2.42	3.55	2.2	0.004	0.87	0.0	0.05	13.71	0.01	2.245	6.81	0.00	6.0	94.0	0.0	-1.50	0.74	0.72	2.30	2.2	0.003	0.69	0.0	0.04	16.06	0.00	2.535	8.86	2.98	5.9	94.1	0.0	-0.70	0.39	0.74	0.73	2.11	8483	1107	5	0	0	0	0	logfile
✔	8SPV	40687	2025-05-21	2023-05-03	3.06	3.08	2.95	3.1	0.003	0.57	0.0	0.04	12.15	0.00	2.159	2.92	0.78	1.1	98.5	0.3	0.32	0.68	0.71	2.13	3.1	0.003	0.65	0.0	0.04	16.24	0.00	2.444	7.00	2.76	4.5	95.5	0.0	0.28	0.85	0.72	0.76	1.73	21804	2835	6	0	0	0	0	logfile
✔	8SPW	40688	2025-05-21	2023-05-03	3.5	3.84	3.67	3.9	0.003	0.61	0.0	0.04	13.74	0.00	1.846	6.47	2.11	2.6	97.4	0.0	-0.04	0.70	0.68	1.14	3.9	0.005	0.74	0.0	0.05	16.50	0.01	1.891	9.76	3.88	4.6	95.4	0.0	-0.54	1.52	0.71	0.73	1.08	21960	2835	11	0	11	0	0	logfile
✔	8SPo	40680	2025-05-29	2023-05-03	2.98	2.34	3.15	2.0	0.006	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.83	0.00	1.140	9.05	1.63	6.0	94.0	0.0	-0.83	1.32	0.57	0.49	0.94	31307	3428	22	154	6	0	0	logfile
✔	8SPR	40682	2025-05-17	2023-05-03	3.9	4.25	3.98	4.1	0.007	0.88	0.0	0.05	15.12	0.01	2.032	21.51	0.32	17.6	82.2	0.2	-5.91	0.74	0.82	2.09	4.1	0.003	0.73	0.0	0.04	16.44	0.00	2.434	10.64	2.90	9.7	90.2	0.1	-2.62	1.24	0.73	0.79	1.43	15032	1932	6	0	0	0	0	logfile

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