Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SPo	40680	2025-05-29	2023-05-03	2.98	2.34	3.15	2.0	0.006	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.83	0.00	1.140	9.05	1.63	6.0	94.0	0.0	-0.83	1.32	0.57	0.49	0.94	31307	3428	22	154	6	0	0	logfile
✔	8oXZ	17269	2025-05-11	2023-05-03	3.7	2.53	3.78	3.3	0.005	0.84	0.0	0.05	18.24	0.01	2.167	15.48	1.23	7.0	93.0	0.0	-1.59	0.70	0.66	0.85	2.2	0.005	0.82	0.0	0.05	17.34	0.00	2.386	12.42	4.46	6.4	93.6	0.0	-1.42	0.92	0.72	0.71	1.97	8324	1078	4	0	8	0	0	logfile
✔	8SPQ	40681	2025-05-16	2023-05-03	3.26	3.88	3.41	3.6	0.005	0.94	0.0	0.05	19.59	0.01	2.037	4.86	0.33	2.5	97.5	0.0	-1.26	0.84	0.86	2.37	3.6	0.002	0.54	0.0	0.04	19.30	0.00	1.943	5.86	1.49	2.7	97.3	0.0	1.13	1.58	0.85	0.88	2.25	14147	1341	7	149	4	0	0	logfile
✔	8SPS	40683	2025-05-17	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.004	0.69	0.0	0.04	26.93	0.00	2.487	9.19	2.49	4.8	95.2	0.0	1.49	0.68	0.85	0.86	2.44	16515	1334	14	294	0	0	0	logfile
✔	8SPV	40687	2025-05-21	2023-05-03	3.06	3.08	2.95	3.1	0.003	0.57	0.0	0.04	12.15	0.00	2.159	2.92	0.78	1.1	98.5	0.3	0.32	0.68	0.71	2.13	3.1	0.003	0.65	0.0	0.04	16.24	0.00	2.444	7.00	2.76	4.5	95.5	0.0	0.28	0.85	0.72	0.76	1.73	21804	2835	6	0	0	0	0	logfile
✔	8SPR	40682	2025-05-17	2023-05-03	3.9	4.25	3.98	4.1	0.007	0.88	0.0	0.05	15.12	0.01	2.032	21.51	0.32	17.6	82.2	0.2	-5.91	0.74	0.82	2.09	4.1	0.003	0.73	0.0	0.04	16.44	0.00	2.434	10.64	2.90	9.7	90.2	0.1	-2.62	1.24	0.73	0.79	1.43	15032	1932	6	0	0	0	0	logfile
✔	8J9K	36110	2025-05-10	2023-05-03	3.5	3.73	3.66	3.8	0.004	0.77	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.005	0.71	0.0	0.04	15.76	0.00	2.509	9.43	3.81	6.5	93.3	0.2	-1.71	0.45	0.78	0.80	2.16	4284	590	3	0	0	0	0	logfile
✔	8J8V	36081	2025-05-13	2023-05-02	3.22	3.39	3.25	3.4	0.005	0.72	0.0	0.05	13.27	0.00	2.228	4.92	0.98	5.1	94.9	0.0	0.23	0.76	0.81	3.25	3.4	0.003	0.59	0.0	0.04	14.67	0.00	2.512	4.65	2.34	5.7	94.3	0.0	0.27	1.14	0.78	0.83	3.21	9437	1205	8	0	0	0	0	logfile
✔	8J8M	36074	2025-05-11	2023-05-02	3.58	4.41	3.61	4.1	0.005	0.82	0.0	0.05	20.77	0.02	2.203	8.97	0.89	4.7	95.3	0.0	0.67	0.65	0.79	1.13	4.1	0.003	0.75	0.0	0.04	17.65	0.00	2.390	8.29	1.27	5.1	94.9	0.0	1.47	0.48	0.66	0.82	0.86	7362	933	7	0	8	0	0	logfile
✔	8J8R	36078	2025-05-15	2023-05-02	2.9	3.08	2.99	3.1	0.004	0.64	0.0	0.04	15.50	0.00	2.199	6.24	2.26	4.0	96.0	0.0	0.97	0.73	0.82	3.14	3.1	0.004	0.64	0.0	0.04	16.14	0.00	2.515	5.00	4.66	4.9	95.1	0.0	0.46	0.28	0.74	0.83	3.15	13424	1733	12	0	0	0	0	logfile
✔	8J90	36083	2025-05-15	2023-05-02	4.71	3.65	4.47	3.6	0.005	0.84	0.0	0.05	24.02	0.01	1.534	23.92	0.30	4.3	95.7	0.0	-0.16	0.73	0.67	—	3.6	0.005	0.77	0.0	0.04	25.00	0.01	2.352	17.44	0.00	4.6	95.3	0.2	-0.15	3.37	0.74	0.71	—	13881	1168	11	222	0	0	0	logfile
✔	8J99	36092	2025-05-28	2023-05-02	2.87	3.78	2.92	3.4	0.008	0.86	1.0	0.05	14.45	0.00	2.136	7.75	0.38	2.9	97.1	0.0	1.42	0.86	0.85	2.77	3.4	0.003	0.60	0.0	0.04	15.40	0.00	2.545	5.01	1.00	3.1	96.9	0.0	2.04	1.08	0.87	0.85	2.34	30533	3912	18	0	6	0	0	logfile
✔	8J8L	36073	2025-05-11	2023-05-02	3.56	4.58	3.57	4.1	0.004	0.82	0.0	0.06	17.56	0.02	2.207	9.58	0.89	4.5	95.5	0.0	0.16	0.67	0.82	1.57	4.1	0.003	0.75	0.0	0.04	16.00	0.00	2.546	9.98	1.52	4.8	95.2	0.0	1.31	0.56	0.67	0.83	1.55	7361	933	7	0	8	0	0	logfile
✔	8SPA	40677	2025-05-09	2023-05-02	3.0	3.73	2.63	3.7	0.006	0.75	0.0	0.04	10.82	0.00	2.614	9.26	0.00	4.3	95.7	0.0	-3.14	0.49	0.82	5.78	3.7	0.003	0.71	0.0	0.04	14.97	0.00	2.597	7.85	3.81	3.4	96.6	0.0	-2.72	1.81	0.52	0.86	5.29	1870	245	5	0	0	0	0	logfile
✔	8oXQ	17268	2025-05-24	2023-05-02	2.5	3.51	2.59	3.1	0.003	0.44	0.0	0.04	13.91	0.00	2.094	5.38	0.00	1.6	98.4	0.0	2.91	0.81	0.87	2.58	3.2	0.004	0.67	0.0	0.04	15.97	0.00	2.140	6.00	1.15	1.8	98.2	0.0	3.19	1.12	0.82	0.88	2.83	25078	3100	4	0	6	0	0	logfile
✔	8oXo	17266	2025-05-23	2023-05-02	3.0	3.84	3.29	3.6	0.003	0.51	0.0	0.04	14.35	0.00	2.081	7.05	0.00	2.2	97.8	0.0	1.76	0.79	0.85	2.01	3.6	0.005	0.72	0.0	0.04	16.20	0.00	1.990	8.46	1.83	2.4	97.6	0.0	2.49	0.68	0.79	0.86	1.59	23986	2966	6	0	6	0	0	logfile
✔	8J92	36085	2025-05-14	2023-05-02	2.9	2.59	2.97	3.0	0.004	0.58	0.0	0.04	28.06	0.00	2.259	7.78	0.00	1.2	98.8	0.0	2.70	0.72	0.77	2.86	2.9	0.004	0.55	0.0	0.03	28.49	0.00	2.542	6.81	2.41	1.4	98.6	0.0	2.81	1.63	0.77	0.83	3.02	12003	749	10	298	0	0	0	logfile
✔	8J91	36084	2025-05-13	2023-05-02	2.9	2.55	2.91	3.0	0.011	1.55	0.0	0.07	26.62	0.02	1.942	5.87	0.18	1.2	98.8	0.0	1.45	0.68	0.76	3.69	2.9	0.003	0.59	0.0	0.03	28.42	0.00	2.470	5.86	1.44	1.8	98.2	0.0	2.70	0.62	0.73	0.83	2.98	9944	678	10	226	0	0	0	logfile
✔	8SPB	40678	2025-05-10	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.004	0.71	0.0	0.04	18.16	0.00	2.474	12.50	3.95	6.5	93.3	0.1	-1.34	0.99	0.48	0.76	1.22	6726	828	6	0	0	0	0	logfile
✔	8J8Z	36082	2025-05-12	2023-05-02	3.4	3.65	3.51	3.7	0.006	0.73	0.0	0.05	14.13	0.00	2.118	7.54	0.86	6.7	93.3	0.0	-0.49	0.78	0.81	3.58	3.7	0.004	0.67	0.0	0.04	15.38	0.00	2.556	7.13	2.69	4.9	95.1	0.0	-0.19	0.41	0.78	0.82	2.62	8722	1142	8	0	0	0	0	logfile

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