Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JMR	9850	2025-04-30	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.07	0.0	0.06	14.10	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.05	0.83	0.78	—	4.1	0.003	0.74	0.0	0.05	13.35	0.01	2.370	10.68	0.00	6.2	93.8	0.0	-2.05	0.80	0.83	0.78	—	9809	1223	12	0	69	0	0	logfile
✔	6o84	0650	2025-04-27	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.003	0.68	0.0	0.04	16.30	0.00	2.556	7.09	2.72	4.6	95.4	0.0	1.36	1.25	0.61	0.81	2.28	6224	712	4	0	118	0	0	logfile
✔	6QVU	4657	2025-04-30	2019-03-05	4.2	6.05	4.19	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	7.0	0.003	0.84	0.0	0.04	11.37	0.01	2.355	16.51	0.00	7.6	92.4	0.0	-0.57	1.37	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✔	6QVB	4646	2025-04-30	2019-03-01	4.34	5.06	4.24	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.92	0.0	0.05	12.61	0.00	2.369	17.85	0.00	8.4	91.6	0.0	-0.48	0.91	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6QVC	4647	2025-04-30	2019-03-01	4.0	4.37	3.71	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.08	0.0	0.05	14.20	0.00	2.515	15.98	2.58	6.1	93.9	0.0	0.41	1.37	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	6QVD	4649	2025-04-30	2019-03-01	4.34	5.50	4.26	6.0	0.010	1.81	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.89	0.0	0.05	12.29	0.00	2.372	16.67	0.00	8.5	91.4	0.2	-0.50	1.38	0.68	0.74	—	9212	1192	2	0	0	0	0	logfile
✔	6QV6	4645	2025-04-28	2019-03-01	3.63	4.00	3.42	4.0	0.010	1.31	0.0	0.07	11.64	0.01	2.282	4.71	1.04	8.0	91.6	0.4	-4.57	0.63	0.82	2.87	4.0	0.004	0.81	0.0	0.04	15.35	0.01	2.499	11.61	6.38	5.9	94.1	0.0	0.46	0.63	0.63	0.81	2.03	7208	938	2	0	0	0	0	logfile
✔	6QPW	4616	2025-04-28	2019-02-15	3.3	3.57	—	3.6	0.005	1.00	0.0	0.06	16.13	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.75	3.06	3.6	0.004	0.69	0.0	0.05	17.71	0.00	2.008	10.99	3.01	5.8	94.2	0.0	-0.72	1.35	0.73	0.78	2.11	6784	839	6	0	4	0	0	logfile
✔	6QPi	4614	2025-04-26	2019-02-14	3.3	3.37	2.40	3.3	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.52	0.0	0.04	5.16	0.00	2.631	1.49	0.00	1.6	98.4	0.0	1.05	0.58	0.41	0.63	—	2288	462	2	0	0	0	0	logfile
✔	6QPC	4613	2025-04-30	2019-02-13	3.5	3.65	3.34	3.6	0.009	1.02	0.0	0.20	15.20	0.01	2.176	5.70	0.22	2.5	97.5	0.0	-3.36	0.60	0.75	2.31	3.6	0.024	0.87	0.0	0.04	16.85	0.01	2.317	11.00	1.87	2.9	97.1	0.0	1.08	0.62	0.62	0.75	2.04	9140	1154	4	0	6	0	0	logfile
✔	6QNT	4608	2025-04-27	2019-02-12	3.5	3.70	—	3.7	0.004	0.85	0.0	0.05	13.95	0.01	2.329	2.96	0.15	7.7	92.3	0.0	-4.25	0.77	0.83	3.32	3.7	0.003	0.67	0.0	0.04	15.72	0.00	2.295	7.85	2.16	5.1	94.9	0.0	-2.20	0.52	0.75	0.82	3.32	5774	733	4	0	0	0	0	logfile
✘	6QNU	4609	2025-04-28	2019-02-12	3.8	3.99	—	3.9	0.004	0.91	0.0	0.06	13.91	0.01	2.324	3.68	0.61	10.0	90.0	0.0	-4.05	0.77	0.81	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7250	920	5	0	0	0	0	logfile
✔	6NUR	0520	2025-04-29	2019-02-01	3.1	3.25	3.17	3.3	0.020	1.61	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.003	0.58	0.0	0.04	14.70	0.00	2.370	5.43	1.68	2.5	97.5	0.0	0.61	0.72	0.58	0.82	3.06	8647	1087	5	0	2	0	0	logfile
✔	6NUS	0521	2025-04-27	2019-02-01	3.5	3.62	3.47	3.6	0.019	1.65	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.65	0.0	0.04	14.98	0.00	2.524	9.23	3.16	2.1	97.9	0.0	0.87	1.86	0.52	0.71	1.09	6632	827	3	0	2	0	0	logfile
✔	6NT9	0506	2025-04-30	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.50	0.0	0.04	13.93	0.00	2.599	3.18	2.00	1.7	98.3	0.0	2.56	0.56	0.83	0.88	3.11	9906	1228	4	0	0	0	0	logfile
✔	6NT5	0502	2025-04-27	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.003	0.58	0.0	0.04	12.65	0.00	2.628	6.32	0.00	1.4	98.6	0.0	1.45	1.15	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✔	6NT6	0503	2025-04-27	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.004	0.76	0.0	0.04	16.18	0.00	2.481	6.56	2.76	2.9	97.1	0.0	0.76	1.19	0.70	0.81	—	4198	556	2	0	0	0	0	logfile
✔	6JC3	9793	2025-04-27	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.69	0.0	0.04	14.27	0.00	2.522	7.21	0.00	3.4	96.6	0.0	0.61	4.20	0.42	0.80	—	3154	391	2	6	0	0	0	logfile
✔	6JBH	9790	2025-04-29	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.003	0.97	0.0	0.05	16.03	0.00	2.444	11.32	2.66	14.4	85.6	0.0	-2.50	1.63	0.68	0.81	1.89	8592	1062	4	0	0	0	0	logfile
✘	6JBJ	9791	2025-04-30	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.77	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9166	1130	4	0	2	0	0	logfile

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