Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QJP	4565	2025-04-26	2019-01-24	3.5	3.64	—	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.1	0.005	0.74	0.0	0.05	12.52	0.00	2.593	9.84	2.94	5.4	94.6	0.0	-3.43	1.60	0.32	0.72	3.79	816	105	3	0	0	0	0	logfile
✔	6QJQ	4566	2025-04-26	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.003	0.77	0.0	0.05	14.45	0.00	2.641	6.78	1.39	6.7	93.3	0.0	-3.49	2.13	0.37	0.75	1.77	1218	162	6	0	0	0	0	logfile
✔	6QJM	4564	2025-04-26	2019-01-24	3.3	3.49	—	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.4	0.003	0.60	0.0	0.05	13.76	0.00	2.511	4.49	2.86	5.1	94.9	0.0	-2.54	1.60	0.33	0.73	3.67	846	111	3	0	0	0	0	logfile
✔	6QJH	4563	2025-04-26	2019-01-24	3.3	3.70	2.76	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.005	0.66	0.0	0.05	15.27	0.00	2.581	0.75	1.96	3.5	96.5	0.0	-2.40	1.51	0.31	0.78	2.98	1302	177	3	0	0	0	0	logfile
✔	6NQ1	0478	2025-04-30	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.003	0.70	0.0	0.04	16.17	0.01	2.548	8.55	2.18	4.7	95.3	0.0	0.87	1.28	0.58	0.82	1.78	10046	1242	2	0	0	0	0	logfile
✔	6NPY	0476	2025-04-28	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.88	0.0	0.05	17.46	0.00	2.458	15.11	3.00	10.4	89.6	0.0	-2.13	1.10	0.78	0.70	0.50	7586	965	3	0	1	0	0	logfile
✔	6NPH	0470	2025-04-28	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	18.34	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.003	0.64	0.0	0.04	17.31	0.00	2.543	5.48	2.27	5.6	94.4	0.0	0.76	0.93	0.60	0.84	2.90	7504	944	4	0	13	0	0	logfile
✔	6NPK	0472	2025-04-28	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.6	0.003	0.61	0.0	0.04	14.42	0.00	2.478	7.23	3.20	6.6	93.4	0.0	0.11	1.21	0.61	0.81	1.98	7134	944	2	0	0	0	0	logfile
✔	6NPJ	0471	2025-04-27	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.69	0.0	0.04	17.56	0.00	2.567	7.47	3.42	6.8	93.2	0.0	-2.11	0.82	0.63	0.78	2.47	6186	768	2	0	0	0	0	logfile
✔	6J6K	0690	2025-04-26	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.53	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.003	0.78	0.0	0.04	14.31	0.00	2.589	6.98	3.49	5.1	94.0	0.9	-2.40	0.61	0.68	0.78	4.44	3548	476	4	0	0	0	0	logfile
✔	6J6J	0689	2025-04-26	2019-01-15	3.2	3.36	—	3.4	0.011	1.06	0.0	0.06	13.51	0.01	2.291	6.43	0.00	11.1	88.9	0.0	-3.36	0.54	0.69	4.31	3.4	0.003	0.61	0.0	0.04	14.87	0.00	2.609	9.43	7.27	8.5	91.5	0.0	-2.50	1.33	0.68	0.80	4.09	3624	476	12	0	4	12	0	logfile
✔	6J5W	0683	2025-04-29	2019-01-12	3.7	3.66	—	3.7	0.008	1.21	0.0	0.07	11.81	0.01	2.236	5.67	0.89	11.0	88.5	0.4	-4.62	0.77	0.81	2.83	3.6	0.004	1.09	0.0	0.05	15.07	0.00	2.199	11.29	2.87	9.0	90.9	0.1	-1.59	0.67	0.77	0.81	2.23	8985	1122	3	0	1	0	0	logfile
✔	6J5A	0670	2025-04-29	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.82	0.0	0.04	12.92	0.00	2.548	8.90	0.00	7.7	92.3	0.0	-1.69	1.81	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6NiY	9382	2025-04-28	2019-01-02	3.34	3.62	3.34	3.7	0.008	0.99	1.0	0.06	13.74	0.01	2.287	5.13	0.12	2.6	97.4	0.0	-0.93	0.70	0.76	2.70	3.7	0.003	0.65	0.0	0.04	16.62	0.00	2.421	8.58	4.16	2.6	97.4	0.0	0.22	0.66	0.73	0.79	1.83	7727	965	6	0	0	0	0	logfile
✔	6Ni2	9375	2025-04-30	2018-12-26	4.0	4.38	—	4.1	0.010	1.33	0.0	0.07	9.61	0.01	2.245	6.60	0.00	6.7	93.1	0.1	-1.50	0.75	0.71	—	4.1	0.003	0.75	0.0	0.04	14.63	0.00	2.498	11.69	2.81	5.9	94.1	0.0	0.07	1.37	0.75	0.73	—	5381	704	5	0	0	0	0	logfile
✔	6NHV	9374	2025-04-29	2018-12-24	3.5	3.46	3.54	3.5	0.010	0.93	0.0	0.05	9.92	0.01	2.125	7.17	0.21	1.8	98.2	0.0	-3.61	0.62	0.71	1.82	3.5	0.003	0.63	0.0	0.04	16.55	0.00	2.473	4.73	3.33	1.8	98.2	0.0	1.69	0.94	0.58	0.79	1.80	8948	1165	8	0	1	0	0	logfile
✔	6iZV	9758	2025-04-27	2018-12-20	4.2	4.27	—	4.2	0.005	0.90	0.0	0.05	10.55	0.01	2.170	5.77	0.00	4.9	95.1	0.0	-3.60	0.68	0.81	—	4.1	0.003	0.71	0.0	0.04	12.78	0.00	1.959	9.15	0.00	5.6	94.4	0.0	-0.96	0.97	0.70	0.82	—	5624	698	4	0	4	0	0	logfile
✔	6NF6	9361	2025-04-27	2018-12-18	3.32	3.42	—	3.4	0.007	0.98	0.0	0.06	15.52	0.01	2.309	4.98	0.00	4.5	95.2	0.3	-2.74	0.54	0.79	2.76	3.4	0.003	0.67	0.0	0.04	16.52	0.00	2.605	10.48	2.49	4.9	95.1	0.0	2.02	0.55	0.55	0.80	2.37	6598	822	4	0	2	0	0	logfile
✔	6NF4	9360	2025-04-28	2018-12-18	2.98	3.35	—	3.3	0.009	1.09	0.0	0.07	13.59	0.01	2.379	2.34	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.57	0.0	0.04	15.24	0.00	2.617	4.67	2.71	3.6	96.4	0.0	4.23	1.15	0.58	0.83	1.82	6960	842	4	0	8	0	0	logfile
✔	6ND1	0440	2025-04-30	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.004	0.72	0.0	0.04	14.90	0.00	2.475	7.25	0.00	4.2	95.8	0.0	0.30	0.62	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile

• ← previous
• Page 237 of 244
• next →