Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NBF	0410	2025-04-30	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	9.17	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.57	0.0	0.04	13.37	0.00	2.580	4.34	2.34	1.9	98.1	0.0	1.32	1.17	0.53	0.74	2.46	9424	1148	7	0	10	0	0	logfile
✔	6NBi	0412	2025-04-30	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.93	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.88	0.0	0.05	15.73	0.00	2.482	14.37	3.50	2.5	97.5	0.0	-0.09	2.53	0.64	0.77	—	9195	1141	7	0	3	0	0	logfile
✔	6N9Y	0383	2025-04-27	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	4.80	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.004	0.76	0.0	0.04	15.43	0.00	2.518	11.27	2.29	9.6	90.4	0.0	-1.41	1.74	0.40	0.79	—	4527	552	1	0	0	0	0	logfile
✘	6N9U	0379	2025-04-30	2018-12-04	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1063	7	18	4	0	0	logfile
✔	6iC3	4452	2025-04-27	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.277	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	3.9	0.005	0.88	0.0	0.04	17.43	0.01	2.522	15.71	1.56	14.6	85.4	0.0	-5.11	1.21	0.72	0.77	0.69	5472	728	8	0	0	0	0	logfile
✘	6N7W	0365	2025-04-28	2018-11-28	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7837	808	5	70	2	0	0	logfile
✔	6iAC	4435	2025-04-28	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.003	0.90	0.0	0.05	16.29	0.01	2.429	10.47	4.16	8.1	91.9	0.0	-0.46	0.98	0.26	0.75	1.48	8210	1057	11	0	0	0	0	logfile
✔	6N4B	0339	2025-04-29	2018-11-18	3.0	3.84	—	3.8	0.013	1.40	4.0	0.09	9.76	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.004	0.69	0.0	0.04	14.66	0.00	2.467	5.68	2.40	3.9	96.1	0.0	-0.34	0.63	0.54	0.82	2.80	8453	1121	6	0	3	0	0	logfile
✔	6N3Q	0336	2025-04-30	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.003	0.76	0.0	0.04	15.43	0.00	2.495	9.76	4.41	4.0	96.0	0.0	1.19	2.70	0.68	0.80	1.40	9931	1290	6	0	0	0	0	logfile
✔	6N37	9339	2025-04-26	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.003	0.80	0.0	0.04	18.58	0.00	2.583	17.13	3.60	8.5	91.5	0.0	-5.08	0.89	0.51	0.77	1.96	2580	360	10	0	0	0	0	logfile
✔	6iRS	9721	2025-04-28	2018-11-14	3.3	3.44	—	3.4	0.011	1.41	0.0	0.07	14.19	0.01	2.150	13.11	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	3.4	0.003	0.82	0.0	0.04	15.67	0.00	2.398	8.78	2.75	7.5	92.4	0.1	-0.92	1.41	0.64	0.79	1.80	7337	926	7	0	10	0	0	logfile
✔	6N3C	0334	2025-04-27	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.006	0.72	0.0	0.04	15.57	0.00	2.502	10.43	8.68	10.0	90.0	0.0	-3.55	1.15	0.54	0.84	4.12	4260	640	20	0	0	0	0	logfile
✔	6iRT	9722	2025-04-28	2018-11-14	3.5	3.76	—	3.7	0.012	1.30	0.0	0.09	14.32	0.01	2.241	10.46	3.01	9.2	90.0	0.8	-5.53	0.63	0.80	3.32	3.7	0.003	0.82	0.0	0.05	14.68	0.00	2.441	6.75	2.62	6.9	92.7	0.3	-1.18	0.89	0.64	0.80	2.29	7348	926	7	0	11	0	0	logfile
✔	6N3B	9350	2025-04-26	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.80	0.0	0.04	16.12	0.01	2.620	18.81	0.75	10.7	89.3	0.0	-5.13	0.81	0.38	0.66	1.32	2735	385	10	0	0	0	0	logfile
✔	6N3A	9349	2025-04-27	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.006	0.94	0.0	0.04	19.04	0.00	2.573	14.35	3.64	10.4	89.6	0.0	-5.08	1.96	0.51	0.79	2.58	4310	600	20	0	0	0	0	logfile
✔	6N2D	9327	2025-04-28	2018-11-12	3.3	3.50	3.27	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.18	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.5	0.005	0.81	0.0	0.05	16.26	0.01	2.544	17.37	8.33	1.9	98.1	0.0	2.00	0.61	0.62	0.80	1.00	7162	993	13	0	0	0	0	logfile
✔	6i52	4410	2025-04-26	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.004	0.84	0.0	0.05	17.77	0.00	2.391	19.56	0.00	10.4	88.9	0.7	-2.93	3.56	0.75	0.58	—	3856	432	4	20	0	0	0	logfile
✔	6i2i	0331	2025-04-28	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	16.64	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.8	0.003	0.71	0.0	0.04	15.83	0.00	1.935	9.77	3.03	2.7	97.3	0.0	-1.54	0.84	0.75	0.75	1.39	6830	856	4	0	5	0	0	logfile
✔	6MST	9232	2025-04-27	2018-10-18	2.7	2.92	1.71	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.004	0.53	0.0	0.04	15.28	0.00	2.616	4.70	0.88	2.7	97.3	0.0	-3.66	1.17	0.67	0.91	6.89	5172	648	12	0	0	0	0	logfile
✔	6HV8	0287	2025-04-30	2018-10-10	4.4	4.51	—	4.4	0.011	1.95	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.87	0.0	0.05	12.58	0.00	2.457	12.54	0.00	12.9	87.1	0.0	-2.67	1.03	0.74	0.71	—	9206	1184	3	0	2	0	0	logfile

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