Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HUD	0274	2025-04-26	2018-10-06	4.0	4.06	—	4.3	0.007	1.13	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.74	0.0	0.04	12.79	0.00	2.557	12.69	1.21	7.7	92.3	0.0	-4.90	1.47	0.60	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6HU7	0273	2025-04-27	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.63	0.0	0.04	15.46	0.00	2.490	7.70	1.28	2.2	97.5	0.3	2.75	1.61	0.54	0.87	3.35	4890	609	7	0	0	0	0	logfile
✔	6MP6	9187	2025-04-30	2018-10-05	3.54	4.04	3.82	4.0	0.006	1.11	0.0	0.06	10.39	0.01	2.439	3.39	0.00	7.9	92.1	0.0	-6.02	0.70	0.81	2.60	4.0	0.003	0.88	0.0	0.04	15.83	0.00	2.512	9.08	4.80	6.7	93.3	0.0	0.46	1.44	0.68	0.82	1.42	9939	1338	6	0	3	0	0	logfile
✔	6MLU	9146	2025-04-26	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.05	0.0	0.06	17.52	0.01	2.460	21.68	7.64	11.9	88.1	0.0	-2.34	2.59	0.44	0.78	—	2516	306	2	0	0	0	0	logfile
✘	6HRE	0259	2025-04-26	2018-09-26	3.2	2.74	2.88	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3522	462	6	0	0	0	0	logfile
✔	6HRF	0260	2025-04-26	2018-09-26	3.3	3.38	2.93	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.006	0.87	0.0	0.05	16.48	0.00	2.477	7.12	2.99	7.8	92.2	0.0	-3.64	3.51	0.37	0.79	3.57	3522	462	6	0	0	0	0	logfile
✔	6HQE	0252	2025-04-29	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.79	0.0	0.04	12.03	0.01	2.509	16.25	0.00	4.3	95.7	0.0	1.46	0.98	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	6Mi7	9125	2025-04-28	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.82	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.82	0.0	0.04	13.68	0.00	2.361	8.85	0.00	7.2	92.8	0.0	-2.00	1.95	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	6MGV	9112	2025-04-30	2018-09-15	3.1	3.21	3.11	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.002	0.60	0.0	0.04	14.13	0.00	2.549	5.55	1.32	3.4	96.6	0.0	1.64	2.11	0.67	0.83	2.68	10150	1268	2	0	0	0	0	logfile
✔	6HN4	0246	2025-04-27	2018-09-14	4.2	4.43	—	4.1	0.007	1.52	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.003	0.72	0.0	0.05	11.49	0.00	2.512	9.05	0.00	6.6	93.4	0.0	0.22	1.10	0.76	0.77	—	5702	700	3	0	6	0	0	logfile
✔	6HN5	0247	2025-04-28	2018-09-14	3.2	3.48	—	3.3	0.012	1.22	0.0	0.07	10.56	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.003	0.74	0.0	0.05	13.04	0.00	2.448	8.66	1.16	6.3	93.7	0.0	-2.13	0.77	0.78	0.80	2.42	7869	953	7	0	11	0	0	logfile
✘	6MG8	9111	2025-04-28	2018-09-13	3.6	3.81	3.39	3.7	0.006	0.75	0.0	0.06	12.86	0.00	2.157	8.79	0.00	8.0	92.0	0.0	-3.49	0.71	0.81	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7034	985	2	0	4	0	0	logfile
✔	6MEo	9108	2025-04-30	2018-09-06	3.9	3.97	3.93	3.9	0.010	1.32	1.0	0.07	14.05	0.01	1.985	7.93	1.01	7.3	92.7	0.0	-4.26	0.54	0.58	1.37	3.9	0.004	0.93	0.0	0.05	14.46	0.00	2.461	12.64	3.42	6.8	93.1	0.1	-1.63	1.22	0.63	0.78	1.50	7465	887	14	0	32	0	0	logfile
✔	6HD5	0201	2025-04-30	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.78	0.0	0.04	12.18	0.00	2.345	17.24	0.00	6.4	93.6	0.1	-0.47	2.05	0.46	0.57	—	9707	1234	3	0	0	0	0	logfile
✔	6HBU	0190	2025-04-30	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.56	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.0	0.005	0.76	0.0	0.05	15.29	0.00	2.166	6.73	2.51	4.8	95.1	0.2	0.88	0.55	0.77	0.89	3.73	9146	1168	4	0	4	0	0	logfile
✔	6EBM	9026	2025-04-29	2018-08-06	4.0	4.06	—	3.9	0.012	1.10	0.0	0.06	9.31	0.01	2.049	5.25	0.00	5.4	94.6	0.0	-4.86	0.66	0.79	—	3.8	0.004	0.91	0.0	0.05	14.67	0.00	2.303	13.32	2.85	4.1	95.9	0.0	0.77	0.95	0.66	0.80	—	8532	1192	4	0	0	0	0	logfile
✔	6E9F	9014	2025-04-29	2018-08-01	3.3	3.57	3.32	3.5	0.011	1.13	0.0	0.07	16.25	0.01	1.872	10.69	0.00	8.1	91.9	0.0	-5.59	0.66	0.81	3.51	3.5	0.004	0.71	0.0	0.04	18.24	0.00	1.978	8.95	3.74	4.7	95.3	0.0	-1.31	1.39	0.67	0.84	2.53	8745	864	4	79	1	0	0	logfile
✔	6E9E	9013	2025-04-29	2018-08-01	3.4	3.44	3.74	3.5	0.006	0.73	0.0	0.04	13.74	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.55	0.0	0.04	16.17	0.00	2.293	4.25	0.39	2.1	97.9	0.0	0.38	1.10	0.78	0.89	3.51	8163	863	3	51	1	0	0	logfile
✔	6H6B	0148	2025-04-28	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.90	0.0	0.18	11.86	0.00	2.441	4.33	4.50	17.9	82.1	0.0	-3.84	1.81	0.40	0.78	3.42	8060	580	10	0	0	0	4100	logfile
✔	6E7C	8998	2025-04-28	2018-07-25	3.65	3.83	3.41	3.8	0.007	0.85	0.0	0.04	12.70	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.003	0.78	0.0	0.04	16.63	0.00	1.993	13.58	2.33	4.0	96.0	0.0	-1.57	0.89	0.50	0.77	2.02	6780	854	4	0	4	0	0	logfile

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