Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6E7C	8998	2025-04-28	2018-07-25	3.65	3.83	3.41	3.8	0.007	0.85	0.0	0.04	12.70	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.003	0.78	0.0	0.04	16.63	0.00	1.993	13.58	2.33	4.0	96.0	0.0	-1.57	0.89	0.50	0.77	2.02	6780	854	4	0	4	0	0	logfile
✔	6E3Y	8978	2025-04-30	2018-07-16	3.3	4.08	—	3.7	0.007	1.01	0.0	0.06	9.69	0.01	2.282	4.51	0.00	2.6	97.4	0.0	-3.02	0.78	0.81	2.06	3.7	0.003	0.69	0.0	0.04	14.17	0.00	2.440	8.59	1.59	2.4	97.6	0.0	0.98	1.36	0.79	0.83	1.79	9434	1194	8	0	1	0	0	logfile
✔	6E1M	8957	2025-04-30	2018-07-10	3.3	3.50	3.29	3.6	0.018	1.61	0.0	0.08	14.98	0.01	1.976	8.65	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.003	0.76	0.0	0.04	15.51	0.00	2.316	10.78	2.12	5.2	94.8	0.0	-0.17	0.73	0.54	0.76	2.35	8913	1072	6	0	23	2	0	logfile
✔	6E0H	8948	2025-04-30	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.77	0.0	0.04	12.31	0.00	2.369	6.96	0.00	5.2	94.8	0.0	-0.69	0.90	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	6DZW	8941	2025-04-28	2018-07-05	4.3	4.31	6.44	4.9	0.006	0.92	0.0	0.09	13.75	0.01	2.052	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	5.0	0.003	0.70	0.0	0.04	13.57	0.00	2.465	12.57	0.00	3.6	96.4	0.0	-1.11	1.71	0.48	0.59	—	7829	988	6	0	4	0	0	logfile
✔	6DZV	8940	2025-04-27	2018-07-05	4.2	4.78	4.73	4.8	0.013	0.71	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.7	0.005	0.82	0.0	0.05	12.91	0.01	2.494	18.05	0.00	6.1	93.9	0.0	-0.82	1.50	0.53	0.72	—	6121	765	5	0	4	0	0	logfile
✔	6DZZ	8943	2025-04-27	2018-07-05	3.6	4.03	4.10	4.1	0.005	0.85	0.0	0.05	12.00	0.01	1.715	4.09	0.16	6.0	94.0	0.0	-5.28	0.42	0.68	1.52	4.1	0.003	0.76	0.0	0.04	15.63	0.00	2.535	9.08	4.50	7.0	93.0	0.0	-1.00	3.51	0.47	0.74	1.82	6141	768	5	0	4	0	0	logfile
✔	6DZY	8942	2025-04-29	2018-07-05	4.1	4.52	4.40	4.5	0.006	0.92	4.0	0.06	12.39	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.004	0.78	0.0	0.04	12.56	0.00	2.494	12.87	0.00	5.8	94.1	0.1	-0.56	1.82	0.44	0.67	—	7842	988	6	0	4	0	0	logfile
✔	6DZ7	8931	2025-04-30	2018-07-03	3.89	4.12	—	3.9	0.010	1.25	0.0	0.07	11.48	0.01	2.305	3.57	0.20	11.7	88.3	0.0	-3.82	0.82	0.79	1.93	3.9	0.003	0.70	0.0	0.04	14.45	0.00	2.576	7.30	1.62	9.0	91.0	0.0	0.62	1.31	0.82	0.80	1.63	9284	1148	2	0	0	0	0	logfile
✔	6A6B	6988	2025-04-27	2018-06-27	3.07	3.41	2.04	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.007	0.75	0.0	0.05	14.37	0.00	2.482	15.24	9.07	9.4	90.6	0.0	-3.10	2.10	0.52	0.72	3.12	5256	756	12	0	0	0	0	logfile
✔	6A69	6987	2025-04-28	2018-06-27	4.11	4.21	—	4.1	0.011	1.48	0.0	0.07	11.87	0.01	2.275	7.51	1.81	13.5	86.4	0.1	-4.69	0.61	0.81	—	4.2	0.003	0.78	0.0	0.04	12.64	0.01	2.556	10.50	0.00	8.3	91.6	0.1	-1.18	1.38	0.59	0.79	—	7851	1038	3	0	1	0	0	logfile
✔	6GX5	0077	2025-04-26	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.70	0.0	0.05	18.21	0.00	2.602	6.41	4.12	4.0	96.0	0.0	-2.83	0.54	0.82	0.86	5.33	2133	282	3	0	0	0	0	logfile
✘	6DW1	8923	2025-04-29	2018-06-26	3.1	3.36	—	3.3	0.006	0.99	0.0	0.06	18.01	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1046	13	0	24	0	0	logfile
✔	6GTD	0062	2025-04-28	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.009	1.06	0.0	0.07	21.99	0.00	1.949	18.63	0.00	23.6	76.4	0.0	-3.88	0.99	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6DSo	8910	2025-04-27	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.4	0.004	0.65	0.0	0.04	14.65	0.00	2.627	5.55	2.08	7.6	92.4	0.0	-4.39	0.62	0.49	0.83	5.41	6588	828	12	0	0	0	0	logfile
✔	6DMo	7964	2025-04-29	2018-06-05	4.1	4.16	—	4.1	0.008	1.29	0.0	0.06	13.72	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.89	0.0	0.05	13.36	0.01	2.520	13.29	0.00	10.0	90.0	0.0	-0.61	1.78	0.58	0.72	—	7853	982	3	0	7	0	0	logfile
✔	6DMB	7963	2025-04-29	2018-06-04	3.9	4.13	—	4.0	0.009	1.39	0.0	0.07	13.90	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.0	0.003	0.89	0.0	0.04	15.36	0.01	2.419	9.48	3.28	11.2	88.8	0.0	-0.81	1.44	0.62	0.78	1.11	7945	990	3	0	9	0	0	logfile
✔	6DJP	7939	2025-04-28	2018-05-25	4.8	5.02	—	4.8	0.012	2.02	0.0	0.08	11.31	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.005	1.11	0.0	0.05	9.57	0.01	2.313	9.91	0.00	15.4	84.5	0.1	-3.87	1.20	0.81	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	6DDE	7868	2025-04-29	2018-05-10	3.5	4.11	—	4.0	0.010	1.05	0.0	0.06	10.87	0.01	2.242	6.97	0.46	6.9	93.0	0.1	-3.56	0.72	0.74	2.43	4.0	0.004	0.80	0.0	0.04	15.38	0.00	2.508	13.34	4.27	5.2	94.8	0.0	-0.58	1.36	0.71	0.75	1.95	8489	1122	8	0	2	0	0	logfile
✔	6DDF	7869	2025-04-28	2018-05-10	3.5	4.16	3.81	4.1	0.006	1.01	0.0	0.06	10.48	0.01	2.228	7.85	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.003	0.72	0.0	0.04	15.58	0.00	2.457	10.69	4.29	5.5	94.5	0.0	-1.21	0.80	0.64	0.70	1.70	6808	890	7	0	2	0	0	logfile

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