Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5YWD	6853	2025-04-30	2017-11-29	4.2	4.38	4.08	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.76	0.0	0.04	13.41	0.00	1.947	12.13	0.00	3.6	96.4	0.0	1.13	1.82	0.65	0.77	—	8997	1154	2	0	4	0	0	logfile
✔	6F36	4176	2025-04-28	2017-11-28	3.7	2.63	—	3.9	0.011	1.31	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.003	0.74	0.0	0.04	15.35	0.00	2.566	12.72	5.05	3.3	96.7	0.1	-0.02	0.86	0.84	0.73	1.07	7453	1039	12	0	0	0	0	logfile
✔	5YRN	6842	2025-04-28	2017-11-09	4.1	3.09	3.52	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.7	0.005	0.90	0.0	0.05	14.63	0.01	2.394	19.83	0.00	3.4	96.6	0.0	-0.96	2.94	0.63	0.81	—	8280	1044	12	0	0	0	0	logfile
✔	6BGJ	7096	2025-04-28	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.005	1.23	1.0	0.05	14.23	0.00	2.307	17.66	1.65	12.9	86.9	0.2	-1.72	1.36	0.50	0.60	1.56	7418	980	4	0	2	0	0	logfile
✔	6BGi	7095	2025-04-28	2017-10-28	3.8	4.07	3.54	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.004	0.82	0.0	0.04	15.17	0.00	2.210	14.03	3.27	10.3	89.7	0.0	-1.50	1.09	0.48	0.66	1.20	7774	1020	4	0	4	0	0	logfile
✔	6B3J	7039	2025-04-29	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.01	0.0	0.06	9.89	0.01	2.229	4.37	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.66	0.0	0.04	14.78	0.00	2.529	9.46	2.68	3.9	96.1	0.0	0.88	1.70	0.70	0.78	1.91	9034	1129	6	0	0	0	0	logfile
✔	6B3o	7040	2025-04-28	2017-09-22	4.1	4.04	—	4.1	0.024	1.83	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.003	0.68	0.0	0.04	13.96	0.00	2.500	6.65	0.00	3.8	95.9	0.3	1.29	1.68	0.70	0.76	—	7980	1032	3	0	0	0	0	logfile
✔	6AVE	7009	2025-04-30	2017-09-02	3.7	3.77	3.69	3.7	0.008	0.93	0.0	0.07	9.62	0.01	2.301	7.29	0.00	5.0	95.0	0.0	-3.23	0.63	0.70	2.82	3.7	0.003	0.71	0.0	0.04	15.12	0.00	2.488	8.42	2.36	2.8	97.2	0.0	0.53	0.78	0.68	0.74	2.35	9657	1272	6	0	6	0	0	logfile
✔	6AVB	7008	2025-04-29	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.85	0.01	2.072	27.43	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.003	1.00	0.0	0.05	15.68	0.01	2.510	14.50	2.71	10.5	89.4	0.1	-1.71	1.38	0.58	0.78	1.78	8673	1101	6	0	3	0	0	logfile
✔	6AV9	7007	2025-04-29	2017-09-01	3.9	3.83	—	3.8	0.008	1.11	0.0	0.06	12.77	0.01	1.920	32.37	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.004	0.96	0.0	0.05	16.36	0.00	2.525	17.09	3.91	10.5	89.0	0.5	-2.19	1.29	0.58	0.79	0.97	8673	1101	6	0	3	0	0	logfile
✔	5oH0	3809	2025-04-27	2017-07-13	4.2	4.36	—	4.2	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.005	0.63	0.0	0.04	11.02	0.00	2.612	5.02	0.00	5.6	94.4	0.0	-2.27	0.64	0.65	0.87	—	6588	942	6	0	0	0	0	logfile
✔	5W81	8782	2025-04-30	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.89	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.69	0.0	0.04	17.15	0.00	1.935	6.84	2.67	3.0	96.9	0.1	0.50	1.53	0.57	0.81	1.39	9393	1173	2	0	4	0	0	logfile
✔	5VRF	8728	2025-04-27	2017-05-10	4.1	4.21	—	4.1	0.013	1.28	0.0	0.06	10.38	0.01	1.994	8.85	0.00	2.5	97.5	0.0	-4.10	0.82	0.83	—	4.1	0.004	0.74	0.0	0.04	13.42	0.00	1.903	9.98	0.00	1.4	98.6	0.0	1.84	3.40	0.83	0.84	—	4378	564	4	0	8	0	0	logfile
✔	5NJG	3654	2025-04-28	2017-03-28	3.78	3.88	—	3.8	0.014	1.33	0.0	0.07	11.64	0.01	2.183	8.78	0.68	6.9	92.9	0.2	-4.16	0.68	0.82	2.92	3.8	0.003	0.76	0.0	0.04	15.30	0.00	2.525	10.83	2.96	5.0	95.0	0.0	0.31	1.99	0.64	0.82	2.13	8038	1020	8	0	4	0	0	logfile
✔	5VAi	8653	2025-04-30	2017-03-27	4.1	4.62	—	4.6	0.012	1.13	0.0	0.05	9.72	0.01	2.049	31.73	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.84	0.0	0.05	13.19	0.01	2.345	18.50	0.00	5.3	94.6	0.2	-0.64	1.07	0.70	0.71	—	9099	1178	6	0	0	0	0	logfile
✔	5V6P	8637	2025-04-29	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.004	0.63	0.0	0.04	13.38	0.00	2.192	10.88	0.00	2.6	97.2	0.2	3.11	1.60	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5UZ7	8623	2025-04-28	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.82	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.003	0.75	0.0	0.04	13.83	0.00	2.350	11.67	0.12	4.4	95.6	0.0	-0.47	1.41	0.67	0.77	—	7643	974	5	0	0	0	0	logfile
✔	5MZ6	3583	2025-04-29	2017-01-31	3.8	3.83	—	3.8	0.005	1.05	0.0	0.05	11.57	0.01	2.269	8.71	0.70	5.2	94.8	0.0	-5.37	0.65	0.71	2.07	3.8	0.003	0.78	0.0	0.04	16.10	0.00	2.482	14.03	2.09	3.3	96.7	0.0	0.06	0.83	0.74	0.77	0.95	8401	1092	2	0	0	0	0	logfile
✘	5X1G	6701	2025-04-26	2017-01-25	4.5	7.89	—	4.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5MSH	3565	2025-04-27	2017-01-04	4.25	3.96	—	44.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	39.0	0.003	0.69	0.0	0.05	13.12	0.01	2.572	12.29	0.00	6.2	93.6	0.2	-1.13	2.66	0.04	0.13	—	4287	551	2	0	0	0	0	logfile

• ← previous
• Page 242 of 244
• next →