Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5MS1	3562	2025-04-27	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.70	0.0	0.05	12.87	0.00	2.598	7.69	0.00	3.3	96.7	0.0	-0.82	0.91	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	5UAR	8461	2025-04-30	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.72	0.0	0.04	16.11	0.00	2.520	8.66	3.09	4.5	95.5	0.0	0.16	1.50	0.61	0.79	0.88	9489	1184	2	0	2	0	0	logfile
✔	5UAK	8516	2025-04-30	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.43	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.75	0.0	0.04	16.70	0.00	2.485	9.63	2.69	3.5	96.5	0.0	0.62	1.54	0.53	0.76	1.30	9232	1139	2	0	19	0	0	logfile
✔	5U1D	8482	2025-04-28	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.003	0.71	0.0	0.04	15.94	0.00	2.503	9.26	4.73	3.2	96.7	0.1	1.51	1.28	0.52	0.74	1.41	7815	1168	3	0	0	0	0	logfile
✔	5U1C	8481	2025-04-29	2016-11-28	3.9	4.05	4.06	4.0	0.013	1.07	0.0	0.05	20.21	0.01	1.964	4.76	0.28	6.3	93.7	0.0	-4.03	0.65	0.70	2.74	4.0	0.003	0.68	0.0	0.04	23.35	0.00	2.018	11.22	2.98	2.9	97.1	0.0	-0.01	1.64	0.70	0.80	1.03	8596	846	12	94	4	0	0	logfile
✔	5TV4	8469	2025-04-28	2016-11-08	4.2	4.13	—	4.0	0.010	1.29	0.0	0.06	20.36	0.01	1.511	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.004	0.88	0.0	0.04	13.57	0.00	2.426	7.47	0.00	7.1	92.9	0.0	-0.80	0.90	0.54	0.67	—	6548	1140	5	0	17	0	0	logfile
✔	5TTP	8467	2025-04-27	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.003	0.81	0.0	0.04	5.37	0.00	2.558	3.04	0.00	15.3	84.5	0.2	-0.48	1.79	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	5M6S	3451	2025-04-26	2016-10-25	4.8	5.27	—	15.0	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.60	0.0	0.03	17.83	0.00	2.501	5.03	0.00	6.2	93.8	0.0	2.32	2.25	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	5M5H	4155	2025-04-26	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.93	0.0	0.05	12.09	0.01	2.313	21.55	0.00	9.5	90.5	0.0	-1.71	1.86	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	5H1B	9566	2025-04-28	2016-10-08	4.4	3.94	—	3.6	0.011	1.41	0.0	0.06	16.13	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.72	0.0	0.04	13.66	0.00	1.974	12.36	0.00	3.6	95.5	0.9	0.77	2.98	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	5H1C	9567	2025-04-28	2016-10-08	4.5	4.34	—	3.8	0.010	1.30	0.0	0.05	15.37	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.003	0.67	0.0	0.04	15.10	0.00	1.955	11.05	0.00	3.3	95.8	1.0	0.49	0.85	0.58	0.83	—	7602	933	8	18	6	0	0	logfile
✔	5LY6	4118	2025-04-26	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.005	0.85	0.0	0.04	14.09	0.01	2.519	15.82	0.00	11.1	88.7	0.2	-2.57	3.30	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5LiJ	4054	2025-04-26	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.003	0.99	0.0	0.04	8.55	0.00	2.570	10.52	0.00	26.7	73.3	0.0	-5.94	0.59	0.85	0.77	—	761	152	1	0	0	0	0	logfile
✔	5Lii	4053	2025-04-26	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.9	0.003	0.94	0.0	0.04	16.66	0.01	2.498	9.61	5.65	14.2	85.2	0.7	-4.11	0.82	0.56	0.67	1.46	3098	433	1	0	0	0	0	logfile
✔	5K0Z	8191	2025-04-30	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	16.62	0.01	2.437	26.51	4.09	4.6	95.4	0.0	-0.32	1.60	0.87	0.83	1.27	9749	1268	8	0	0	41	0	logfile
✔	3JC2	3245	2025-04-27	2015-11-15	3.6	3.58	3.95	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.87	0.0	0.04	16.96	0.00	2.512	12.68	2.93	8.5	90.9	0.6	-1.43	3.29	0.24	0.53	1.22	3911	482	4	0	32	0	0	logfile
✔	5FNA	3241	2025-04-27	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.003	0.74	0.0	0.04	13.16	0.00	2.636	9.16	0.00	7.2	92.8	0.0	-0.43	2.64	0.49	0.78	—	5328	680	8	0	0	0	0	logfile
✔	5FN5	3240	2025-04-30	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.006	0.92	0.0	0.05	14.07	0.01	2.407	23.45	0.00	9.7	89.6	0.7	-1.21	1.04	0.70	0.80	—	9645	1227	4	0	0	0	0	logfile
✔	5FN4	3239	2025-04-30	2015-11-10	4.0	4.24	—	4.1	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.63	0.01	2.490	18.39	4.01	7.7	91.7	0.6	-0.26	1.71	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	3JBS	6478	2025-04-26	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.67	0.0	0.04	18.15	0.00	2.651	4.14	4.61	1.2	98.8	0.0	0.57	1.84	0.21	0.82	3.36	1401	175	1	0	0	0	0	logfile

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