Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8FXi	29534	2025-06-25	2023-01-24	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29641	3684	10	0	6	0	0	logfile
✔	8FXC	29531	2025-06-06	2023-01-24	3.2	3.50	3.23	3.6	0.012	1.43	3.0	0.10	11.35	0.01	2.403	4.68	1.91	3.3	96.0	0.7	-1.21	0.67	0.74	3.85	3.6	0.003	0.61	0.0	0.04	14.17	0.00	2.137	4.81	2.06	3.0	97.0	0.0	-0.02	0.54	0.69	0.79	3.15	7639	1002	6	0	8	0	0	logfile
✔	8CAX	16535	2025-06-04	2023-01-24	3.7	3.92	3.27	4.2	0.009	1.65	6.0	0.09	14.83	0.01	2.271	8.26	4.55	9.6	90.4	0.0	-3.97	0.46	0.83	4.11	4.2	0.004	0.95	0.0	0.05	16.57	0.01	2.561	9.96	4.04	6.6	93.4	0.0	-2.76	3.39	0.39	0.76	4.01	3444	450	6	0	0	0	0	logfile
✔	8FXB	29530	2025-06-06	2023-01-24	3.1	3.37	3.13	3.5	0.011	1.24	1.0	0.07	10.52	0.01	2.024	5.30	0.59	3.2	96.4	0.4	-0.59	0.64	0.70	2.98	3.5	0.004	0.66	0.0	0.04	14.41	0.00	2.503	6.34	1.19	3.8	96.2	0.0	0.42	1.18	0.65	0.75	2.64	7912	976	6	0	7	0	0	logfile
✔	8i54	35191	2025-06-18	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	19.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.61	1.0	0.04	19.63	0.00	2.077	15.74	0.98	14.1	85.8	0.1	-2.99	0.57	0.85	0.71	0.82	19661	1113	4	67	0	0	9100	logfile
✔	8CA1	16515	2025-06-08	2023-01-24	3.9	3.75	4.02	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.003	0.65	0.0	0.04	15.89	0.00	2.614	9.04	1.49	2.1	97.9	0.0	2.19	1.99	0.77	0.80	1.88	9036	1178	4	0	2	0	0	logfile
✔	8FWQ	29515	2025-06-23	2023-01-23	3.96	4.37	4.09	4.1	0.010	1.33	0.0	0.10	18.59	0.01	2.216	4.86	0.28	7.9	91.5	0.7	-4.98	0.72	0.76	1.01	4.1	0.003	0.89	0.0	0.05	14.17	0.00	2.484	11.25	1.87	6.9	93.0	0.2	-0.85	0.89	0.73	0.77	1.15	26805	3272	26	0	67	0	0	logfile
✔	8FWT	29518	2025-06-11	2023-01-23	3.09	3.38	3.14	3.4	0.007	1.13	0.0	0.07	16.22	0.01	2.333	2.08	0.82	8.0	92.0	0.0	-5.70	0.65	0.78	3.60	3.4	0.006	0.81	0.0	0.05	14.07	0.00	2.400	6.47	2.01	7.2	92.8	0.0	-1.42	1.36	0.74	0.86	3.66	12606	1532	16	0	30	0	0	logfile
✔	8FX4	29523	2025-06-12	2023-01-23	3.9	2.80	4.16	2.5	0.004	0.91	0.0	0.05	18.48	0.00	2.117	13.89	0.80	7.7	91.9	0.4	-1.50	0.73	0.72	1.18	2.4	0.004	0.82	0.0	0.05	18.84	0.00	2.392	10.10	4.82	8.8	91.0	0.2	-1.14	0.47	0.73	0.72	0.84	13474	1645	6	0	2	0	0	logfile
✔	8FWM	29512	2025-06-23	2023-01-23	3.49	3.85	3.68	3.9	0.005	0.93	0.0	0.05	14.58	0.01	2.205	13.47	2.37	13.8	85.1	1.2	-4.62	0.37	0.79	1.94	3.8	0.004	0.80	0.0	0.05	16.47	0.01	2.405	9.42	4.13	11.0	88.9	0.1	-2.00	0.83	0.39	0.84	1.77	26669	3483	15	0	0	0	0	logfile
✔	8FWW	29521	2025-06-13	2023-01-23	3.1	3.34	3.12	3.4	0.013	1.67	0.0	0.12	20.28	0.01	2.206	6.04	1.17	9.7	90.3	0.0	-5.95	0.59	0.76	2.91	3.4	0.004	0.71	0.0	0.04	17.20	0.00	2.381	7.71	2.56	7.9	92.1	0.0	-0.51	0.96	0.66	0.84	2.10	14471	1680	14	0	49	0	0	logfile
✔	8FWS	29517	2025-06-13	2023-01-23	3.23	3.47	3.26	3.5	0.012	1.65	0.0	0.12	19.90	0.01	2.250	4.96	0.55	8.5	91.1	0.4	-5.96	0.65	0.74	3.06	3.5	0.007	0.89	0.0	0.05	18.59	0.00	2.319	10.06	2.83	8.3	91.3	0.4	-1.71	1.17	0.73	0.84	2.80	14416	1680	14	0	46	0	0	logfile
✔	8FX5	29524	2025-06-07	2023-01-23	2.45	3.11	2.28	2.8	0.004	0.83	0.0	0.05	12.50	0.01	2.299	2.42	0.11	2.0	98.0	0.0	-0.73	0.76	0.90	4.91	2.8	0.003	0.62	0.0	0.04	14.80	0.00	2.422	4.60	1.70	1.7	98.3	0.0	1.28	0.97	0.75	0.91	4.32	8818	1127	9	0	2	47	0	logfile
✔	8C9X	16513	2025-06-12	2023-01-23	2.3	3.14	2.24	2.8	0.004	0.72	0.0	0.05	17.44	0.00	2.143	9.34	2.46	3.1	96.9	0.0	-1.03	0.87	0.92	4.69	2.8	0.005	0.92	1.0	0.05	16.97	0.00	2.152	7.18	2.25	4.4	95.6	0.0	-0.70	0.82	0.82	0.91	5.09	13485	1635	20	0	20	0	0	logfile
✔	8FWV	29520	2025-06-11	2023-01-23	3.03	3.27	3.07	3.3	0.007	1.24	0.0	0.10	14.82	0.01	2.334	3.96	1.19	7.3	92.4	0.3	-5.20	0.68	0.81	4.53	3.3	0.003	0.72	0.0	0.05	13.98	0.00	2.433	4.84	2.54	4.3	95.7	0.0	-0.76	0.61	0.71	0.86	3.11	12584	1532	16	0	28	0	0	logfile
✔	8FWR	29516	2025-06-11	2023-01-23	3.1	3.33	3.13	3.5	0.008	1.24	0.0	0.07	19.32	0.01	2.334	2.19	0.00	7.7	91.7	0.5	-5.62	0.63	0.73	3.45	3.4	0.003	0.70	0.0	0.04	14.01	0.00	2.413	5.14	1.57	5.5	94.4	0.1	-0.65	1.20	0.61	0.75	3.17	12628	1532	16	0	32	0	0	logfile
✔	8C9H	16510	2025-06-14	2023-01-22	3.2	3.51	3.26	3.6	0.005	0.59	0.0	0.04	12.20	0.00	2.324	4.83	0.44	3.9	96.1	0.0	2.63	0.70	0.88	2.95	3.6	0.005	0.58	0.0	0.04	14.13	0.01	2.629	4.93	2.14	3.9	96.1	0.0	2.50	0.31	0.69	0.90	2.25	15776	2024	16	0	8	0	0	logfile
✔	8FWK	29511	2025-06-08	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.0	0.003	0.75	0.0	0.04	15.43	0.00	2.491	10.30	2.08	10.3	89.4	0.3	-0.87	1.48	0.68	0.77	0.70	9462	1194	2	0	0	0	0	logfile
✔	8C8T	16493	2025-06-17	2023-01-21	3.2	3.50	3.27	3.5	0.004	0.72	0.0	0.05	14.74	0.01	2.135	5.88	0.10	3.0	96.9	0.1	-0.55	0.68	0.83	3.00	3.5	0.004	0.71	0.0	0.05	14.68	0.00	2.309	4.29	2.95	4.7	95.1	0.1	-0.71	0.36	0.66	0.85	3.16	19762	2502	32	0	56	0	0	logfile
✔	8C98	16505	2025-06-25	2023-01-21	3.66	4.27	3.72	3.6	0.002	0.38	0.0	0.03	22.60	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.6	0.006	0.64	0.0	0.04	22.96	0.00	2.086	11.54	2.84	8.4	91.6	0.0	-0.73	0.58	0.79	0.83	1.39	30284	1080	12	1018	0	0	0	logfile

• ← previous
• Page 294 of 700
• next →