Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C99	16506	2025-06-23	2023-01-21	3.29	3.69	3.36	3.3	0.002	0.39	0.0	0.03	22.33	0.00	1.957	5.35	0.00	4.7	95.3	0.0	0.97	0.79	0.79	2.26	3.3	0.006	0.65	0.0	0.04	22.63	0.00	2.057	9.40	2.00	7.6	92.4	0.0	-0.66	0.52	0.81	0.85	1.93	27988	987	11	945	0	0	0	logfile
✔	8C98	16505	2025-06-25	2023-01-21	3.66	4.27	3.72	3.6	0.002	0.38	0.0	0.03	22.60	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.6	0.006	0.64	0.0	0.04	22.96	0.00	2.086	11.54	2.84	8.4	91.6	0.0	-0.73	0.58	0.79	0.83	1.39	30284	1080	12	1018	0	0	0	logfile
✔	8C8T	16493	2025-06-17	2023-01-21	3.2	3.50	3.27	3.5	0.004	0.72	0.0	0.05	14.74	0.01	2.135	5.88	0.10	3.0	96.9	0.1	-0.55	0.68	0.83	3.00	3.5	0.004	0.71	0.0	0.05	14.68	0.00	2.309	4.29	2.95	4.7	95.1	0.1	-0.71	0.36	0.66	0.85	3.16	19762	2502	32	0	56	0	0	logfile
✔	8FW9	29498	2025-06-18	2023-01-20	4.46	4.77	4.48	4.5	0.012	1.19	0.0	0.07	10.84	0.00	2.330	1.88	0.08	5.1	94.1	0.9	-0.82	0.76	0.77	—	4.5	0.004	0.79	0.0	0.04	13.24	0.00	2.408	14.31	0.00	8.7	91.3	0.0	-0.32	2.39	0.77	0.80	—	21612	2712	3	0	0	0	0	logfile
✔	8C8G	16475	2025-06-17	2023-01-20	2.98	3.19	3.05	3.2	0.013	1.50	1.0	0.08	14.19	0.01	2.198	6.69	0.88	8.0	91.8	0.2	-4.21	0.72	0.89	4.21	3.2	0.007	0.72	0.0	0.05	16.38	0.00	2.420	8.47	2.06	6.1	93.9	0.0	-1.17	0.43	0.70	0.87	3.22	20362	2530	2	0	0	0	0	logfile
✔	8FWB	29500	2025-06-29	2023-01-20	3.14	3.48	3.22	3.6	0.005	0.83	0.0	0.05	15.00	0.00	2.237	11.31	2.57	12.8	87.2	0.0	-3.49	0.48	0.84	2.30	3.5	0.003	0.70	0.0	0.04	17.29	0.00	2.524	6.15	3.56	10.9	89.1	0.0	-0.88	0.60	0.44	0.83	2.02	35256	4572	12	0	0	0	0	logfile
✔	8C8K	16482	2025-06-10	2023-01-20	2.87	2.34	2.71	2.8	0.013	1.50	0.0	0.08	13.31	0.01	2.261	10.98	0.63	1.9	98.1	0.0	-1.75	0.29	0.70	3.14	2.8	0.006	1.11	3.0	0.06	17.27	0.01	2.228	7.64	4.17	2.5	97.5	0.0	-1.64	1.27	0.35	0.78	3.45	11430	1518	6	0	0	0	0	logfile
✔	8C8P	16490	2025-06-04	2023-01-20	4.1	5.09	4.14	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.003	0.73	0.0	0.04	12.94	0.00	2.546	11.91	0.00	4.8	95.2	0.0	-1.70	1.09	0.68	0.72	—	2449	314	2	0	0	0	0	logfile
✔	8FW2	29496	2025-06-18	2023-01-20	3.8	4.07	3.80	4.0	0.011	1.16	0.0	0.07	10.69	0.00	2.235	1.40	0.17	5.3	94.0	0.7	-0.39	0.71	0.78	1.64	4.0	0.004	0.74	0.0	0.04	15.52	0.00	2.441	9.12	2.06	7.0	92.9	0.1	-0.54	2.99	0.70	0.75	1.42	21612	2712	3	0	0	0	0	logfile
✔	8FVU	29493	2025-06-16	2023-01-19	3.6	3.85	3.65	3.8	0.014	1.23	0.0	0.07	10.95	0.00	2.338	2.29	0.00	6.9	91.7	1.4	-1.70	0.80	0.83	2.31	3.8	0.003	0.70	0.0	0.04	15.68	0.00	2.380	6.45	1.81	8.9	91.1	0.0	-0.59	2.32	0.79	0.82	1.85	18758	2344	4	0	4	0	0	logfile
✔	8FVR	29491	2025-06-22	2023-01-19	2.42	2.64	2.53	2.7	0.003	0.73	0.0	0.05	14.46	0.01	2.002	8.85	0.07	2.4	97.6	0.0	0.56	0.72	0.88	3.95	2.6	0.003	0.58	0.0	0.04	16.95	0.00	1.954	6.05	1.22	2.2	97.7	0.0	0.85	0.44	0.72	0.89	3.81	26040	3165	17	51	3	201	0	logfile
✔	8i4G	35172	2025-06-05	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.3	0.004	0.84	0.0	0.05	14.93	0.00	2.378	13.39	4.21	12.6	87.4	0.0	-3.29	1.59	0.70	0.68	1.08	6057	768	2	0	0	0	0	logfile
✔	8C89	16473	2025-06-05	2023-01-19	4.41	3.51	3.70	2.2	0.007	1.13	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.004	0.82	0.0	0.05	13.57	0.01	2.394	22.47	0.00	10.4	89.6	0.0	-1.99	0.54	0.69	0.64	—	5106	652	5	0	4	0	0	logfile
✔	8i4H	35173	2025-06-05	2023-01-19	3.81	3.30	3.93	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.5	0.004	0.92	0.0	0.05	14.33	0.01	2.395	17.87	4.18	13.0	87.0	0.0	-3.12	1.85	0.71	0.68	1.02	6539	833	2	0	0	0	0	logfile
✔	8i4A	35167	2025-06-08	2023-01-19	3.4	3.59	3.42	3.6	0.013	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	3.6	0.003	0.59	0.0	0.04	15.96	0.00	2.593	6.53	2.17	1.9	98.1	0.0	1.35	1.13	0.59	0.79	0.87	9763	1218	2	0	1	0	0	logfile
✘	8FVW	29494	2025-06-22	2023-01-19	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26108	3165	18	52	5	225	0	logfile
✘	8BQV	16188	2025-06-06	2023-01-18	2.0	1.96	1.89	1.9	0.008	0.96	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8i48	35164	2025-06-12	2023-01-18	2.74	3.16	2.70	3.0	0.005	0.89	0.0	0.06	23.41	0.01	2.243	13.18	0.36	4.6	95.4	0.0	-1.37	0.71	0.85	2.60	3.0	0.003	0.68	0.0	0.04	19.30	0.00	2.450	5.58	1.57	2.8	97.2	0.0	0.93	0.35	0.76	0.88	2.92	14270	1560	15	0	45	160	0	logfile
✘	8i42	35162	2025-06-12	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✔	8i41	35161	2025-06-12	2023-01-18	3.42	3.95	3.47	3.8	0.002	0.47	0.0	0.04	20.47	0.00	2.152	5.38	0.36	6.3	93.7	0.0	-0.66	0.83	0.85	2.51	3.8	0.003	0.55	0.0	0.04	16.99	0.00	2.431	5.75	2.56	5.2	94.8	0.0	-0.38	0.30	0.83	0.85	2.51	13515	1565	10	0	25	0	0	logfile

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