Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C82	16469	2025-06-18	2023-01-18	3.4	3.85	3.46	3.8	0.003	0.62	0.0	0.04	17.02	0.00	2.108	4.64	0.09	3.0	97.0	0.0	0.90	0.70	0.81	2.29	3.8	0.002	0.56	0.0	0.04	16.20	0.00	2.577	3.13	1.56	3.3	96.7	0.0	1.29	0.47	0.71	0.84	1.97	21070	2618	12	0	6	0	0	logfile
✔	8FUZ	29482	2025-06-20	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	18.07	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.003	0.59	0.0	0.04	17.94	0.00	2.505	2.96	2.05	1.9	98.1	0.0	1.15	0.31	0.77	0.91	5.76	24008	3120	16	0	16	0	0	logfile
✔	8C81	16468	2025-06-14	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.45	0.00	2.505	2.92	0.88	3.6	96.4	0.0	1.02	0.28	0.74	0.87	1.81	15709	1938	8	0	6	0	0	logfile
✔	8C80	16467	2025-06-10	2023-01-18	3.4	3.89	3.54	3.8	0.006	0.85	1.0	0.05	15.81	0.01	1.975	6.41	0.75	4.2	95.8	0.0	-1.48	0.65	0.77	1.46	3.8	0.003	0.85	1.0	0.05	15.46	0.00	2.212	4.26	2.01	2.9	97.0	0.1	0.57	0.80	0.71	0.84	1.98	10968	1350	7	0	6	0	0	logfile
✔	8i3V	35157	2025-06-07	2023-01-18	2.85	3.23	2.85	3.2	0.003	0.54	0.0	0.04	16.33	0.00	2.029	3.98	2.16	2.2	97.6	0.2	1.90	0.59	0.81	3.09	3.2	0.003	0.51	0.0	0.04	15.71	0.00	2.487	2.39	0.87	1.8	98.0	0.2	2.04	0.35	0.53	0.78	3.30	8792	548	2	0	2	11	4373	logfile
✔	8i47	35163	2025-06-12	2023-01-18	2.7	3.00	2.60	2.9	0.004	0.84	0.0	0.05	21.44	0.01	2.184	11.54	1.00	4.8	95.2	0.0	-1.87	0.66	0.85	2.27	2.9	0.003	0.63	0.0	0.04	19.21	0.00	2.465	6.91	0.85	2.9	97.1	0.0	0.93	0.41	0.68	0.86	2.60	13695	1560	15	0	30	30	0	logfile
✔	8FUV	29481	2025-06-09	2023-01-18	3.1	3.21	2.88	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.004	0.61	0.0	0.05	14.34	0.01	2.465	5.22	1.94	5.4	94.2	0.4	-0.57	1.17	0.37	0.89	3.49	10170	1368	7	0	0	0	0	logfile
✔	8i41	35161	2025-06-12	2023-01-18	3.42	3.95	3.47	3.8	0.002	0.47	0.0	0.04	20.47	0.00	2.152	5.38	0.36	6.3	93.7	0.0	-0.66	0.83	0.85	2.51	3.8	0.003	0.55	0.0	0.04	16.99	0.00	2.431	5.75	2.56	5.2	94.8	0.0	-0.38	0.30	0.83	0.85	2.51	13515	1565	10	0	25	0	0	logfile
✘	8i42	35162	2025-06-12	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✔	8i3U	35156	2025-06-04	2023-01-18	3.6	3.90	3.35	3.8	0.007	0.64	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.005	0.73	0.0	0.04	15.12	0.01	2.507	10.80	3.27	5.8	94.2	0.0	-0.71	0.75	0.69	0.79	2.79	3408	437	4	0	1	0	0	logfile
✔	8i3i	35153	2025-06-15	2023-01-17	2.68	2.94	2.69	2.9	0.007	0.94	4.0	0.06	15.82	0.01	2.175	6.83	0.44	7.1	92.7	0.2	-1.00	0.81	0.86	3.85	2.9	0.005	0.65	0.0	0.05	17.23	0.00	2.281	6.56	2.72	7.3	92.7	0.0	-0.52	1.08	0.82	0.87	3.52	16808	2088	8	0	8	0	0	logfile
✔	8FUK	29459	2025-06-20	2023-01-17	3.36	3.71	3.47	3.7	0.003	0.56	0.0	0.04	17.11	0.01	2.068	8.01	0.24	4.4	95.6	0.0	0.29	0.78	0.85	2.82	3.7	0.004	0.59	0.0	0.04	17.58	0.00	2.363	7.29	3.01	4.5	95.5	0.0	0.12	0.34	0.73	0.82	2.65	23608	2784	11	60	0	0	0	logfile
✔	8FUG	29458	2025-06-23	2023-01-17	2.7	2.73	2.58	2.9	0.005	0.56	0.0	0.05	9.78	0.00	2.220	7.47	3.12	9.9	90.1	0.0	-3.91	0.64	0.80	3.98	2.9	0.004	0.68	0.0	0.05	16.35	0.00	2.457	5.33	4.21	12.2	87.8	0.0	-3.55	0.79	0.64	0.85	3.64	26634	1679	46	0	23	0	13317	logfile
✔	8i3S	35155	2025-06-04	2023-01-17	3.9	4.12	3.88	4.1	0.009	0.98	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.003	0.71	0.0	0.05	15.72	0.01	2.491	14.13	5.93	5.6	94.4	0.0	-1.09	2.27	0.65	0.73	0.72	3272	420	4	0	1	0	0	logfile
✔	8i3Q	35154	2025-06-06	2023-01-17	3.1	3.03	2.95	3.1	0.007	0.89	0.0	0.05	22.35	0.02	1.762	14.07	5.39	7.2	92.8	0.0	0.08	0.79	0.76	3.10	3.0	0.002	0.58	0.0	0.04	21.78	0.00	2.513	6.00	0.77	5.3	94.7	0.0	1.74	2.00	0.80	0.80	2.41	6998	595	3	95	1	0	0	logfile
✔	8i3D	35150	2025-06-07	2023-01-17	2.81	3.08	2.87	3.1	0.009	0.99	2.0	0.06	13.50	0.01	2.328	2.52	0.83	5.6	94.4	0.0	-5.74	0.67	0.88	3.66	3.1	0.006	0.69	0.0	0.05	15.62	0.00	2.519	3.53	2.49	4.9	95.1	0.0	0.02	0.41	0.65	0.89	3.17	8798	1132	2	0	0	0	0	logfile
✔	8i3C	35149	2025-06-07	2023-01-16	2.85	3.26	3.02	3.2	0.009	1.02	0.0	0.06	15.63	0.01	2.313	4.42	1.81	6.4	93.6	0.0	-6.17	0.66	0.86	3.78	3.2	0.005	0.70	0.0	0.04	15.62	0.00	2.556	4.25	2.13	4.9	95.1	0.0	-0.88	1.27	0.59	0.86	3.02	8664	1104	4	0	2	0	0	logfile
✔	8i35	35144	2025-06-22	2023-01-16	2.75	2.99	2.81	2.9	0.007	0.89	0.0	0.06	16.85	0.01	2.220	10.49	0.29	8.7	91.2	0.2	-1.50	0.76	0.77	4.12	2.9	0.002	0.51	0.0	0.04	17.22	0.00	2.366	21.37	0.94	6.6	93.3	0.2	-0.36	2.07	0.82	0.87	3.51	26070	3168	12	0	6	0	744	logfile
✔	8FU6	29453	2025-06-07	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	3.2	0.003	0.55	0.0	0.04	15.48	0.00	2.522	2.23	1.16	2.5	97.5	0.0	0.84	0.36	0.61	0.83	3.04	8834	1112	6	0	0	0	0	logfile
✔	8i38	35145	2025-06-06	2023-01-16	2.9	3.23	3.00	3.2	0.006	1.20	4.0	0.07	12.79	0.01	1.981	16.41	0.00	8.8	91.0	0.2	-6.34	0.49	0.71	2.72	3.2	0.003	0.70	0.0	0.04	15.27	0.00	2.538	6.54	1.93	7.0	92.8	0.2	-1.24	1.17	0.50	0.73	2.03	8122	1042	2	0	0	0	0	logfile

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