Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i39	35146	2025-06-07	2023-01-16	2.85	3.17	2.92	3.2	0.009	0.90	0.0	0.05	14.17	0.01	2.116	22.50	0.22	6.2	93.8	0.0	-5.71	0.59	0.78	3.76	3.1	0.003	0.67	0.0	0.04	15.73	0.00	2.604	5.67	2.74	3.7	96.3	0.0	-0.94	1.31	0.49	0.74	3.16	8413	1076	3	0	1	0	0	logfile
✔	8FU6	29453	2025-06-07	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	3.2	0.003	0.55	0.0	0.04	15.48	0.00	2.522	2.23	1.16	2.5	97.5	0.0	0.84	0.36	0.61	0.83	3.04	8834	1112	6	0	0	0	0	logfile
✔	8i3C	35149	2025-06-07	2023-01-16	2.85	3.26	3.02	3.2	0.009	1.02	0.0	0.06	15.63	0.01	2.313	4.42	1.81	6.4	93.6	0.0	-6.17	0.66	0.86	3.78	3.2	0.005	0.70	0.0	0.04	15.62	0.00	2.556	4.25	2.13	4.9	95.1	0.0	-0.88	1.27	0.59	0.86	3.02	8664	1104	4	0	2	0	0	logfile
✔	8FU8	29455	2025-06-22	2023-01-16	3.08	2.74	3.01	3.0	0.013	1.29	0.0	0.11	10.27	0.00	2.336	1.90	0.14	5.4	93.6	1.1	-0.39	0.75	0.85	3.36	3.0	0.003	0.63	0.0	0.04	13.72	0.00	2.433	5.81	1.41	7.3	92.6	0.1	-0.40	0.71	0.75	0.88	2.95	25469	3165	6	0	48	0	0	logfile
✔	8i35	35144	2025-06-22	2023-01-16	2.75	2.99	2.81	2.9	0.007	0.89	0.0	0.06	16.85	0.01	2.220	10.49	0.29	8.7	91.2	0.2	-1.50	0.76	0.77	4.12	2.9	0.002	0.51	0.0	0.04	17.22	0.00	2.366	21.37	0.94	6.6	93.3	0.2	-0.36	2.07	0.82	0.87	3.51	26070	3168	12	0	6	0	744	logfile
✔	8i3B	35148	2025-06-07	2023-01-16	3.08	3.71	3.19	3.6	0.008	1.19	0.0	0.06	14.31	0.01	2.249	4.61	1.50	8.8	91.2	0.0	-5.42	0.53	0.78	2.75	3.6	0.003	0.65	0.0	0.04	15.58	0.00	2.572	5.01	2.24	6.2	93.8	0.0	-1.08	0.97	0.52	0.77	2.37	8646	1100	4	0	2	0	0	logfile
✔	8FU3	29452	2025-06-12	2023-01-16	2.88	2.76	2.85	2.9	0.014	1.15	0.0	0.06	10.40	0.00	2.330	1.65	0.07	1.6	97.9	0.5	0.75	0.58	0.76	4.22	2.9	0.003	0.59	0.0	0.04	15.92	0.00	2.347	8.38	2.35	2.6	97.3	0.1	1.39	0.67	0.71	0.85	3.85	13563	1673	6	0	1	0	0	logfile
✔	8C7G	16457	2025-06-10	2023-01-15	3.2	2.28	—	2.1	0.004	0.63	0.0	0.05	13.28	0.00	2.111	4.10	0.00	3.4	96.6	0.0	0.11	0.76	0.74	3.44	2.2	0.003	0.54	0.0	0.04	15.24	0.00	2.311	3.10	1.47	3.0	97.0	0.0	0.66	0.30	0.77	0.76	3.02	11525	1429	3	0	0	0	0	logfile
✔	8i1T	35121	2025-06-19	2023-01-13	2.8	2.69	2.76	2.8	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.8	0.002	0.54	0.0	0.04	15.46	0.00	2.537	5.58	1.55	2.8	97.0	0.2	-0.47	0.29	0.58	0.88	3.11	22939	3003	7	0	0	0	0	logfile
✔	8i22	35129	2025-06-21	2023-01-13	2.15	2.49	2.17	2.4	0.007	0.72	0.0	0.06	17.84	0.00	2.236	8.42	0.65	3.9	95.9	0.2	-0.28	0.80	0.86	4.96	2.4	0.003	0.55	0.0	0.04	17.47	0.00	2.524	5.55	1.08	3.7	95.9	0.4	0.31	0.41	0.75	0.87	4.59	25398	3180	12	0	6	0	0	logfile
✔	8i23	35130	2025-06-22	2023-01-13	3.03	2.25	3.02	2.1	0.003	0.54	0.0	0.04	16.99	0.00	2.151	8.90	0.15	4.3	95.7	0.0	-0.28	0.79	0.77	2.80	2.1	0.003	0.57	0.0	0.04	18.77	0.00	2.103	7.43	2.51	3.5	96.5	0.0	0.19	0.34	0.79	0.80	2.29	26272	3066	9	108	3	0	0	logfile
✔	8i1V	35123	2025-06-19	2023-01-13	2.6	3.00	2.59	3.0	0.005	0.62	0.0	0.04	13.20	0.00	2.058	7.77	0.04	3.2	96.8	0.0	-0.33	0.60	0.81	3.39	3.0	0.004	0.63	0.0	0.04	14.85	0.00	2.391	6.81	1.45	3.1	96.9	0.0	-0.16	0.53	0.61	0.89	3.26	23870	3127	14	0	0	0	0	logfile
✔	8i24	35131	2025-06-22	2023-01-13	3.36	2.98	3.63	2.9	0.004	0.62	0.0	0.05	18.26	0.00	2.029	7.97	0.91	3.4	96.6	0.0	-0.46	0.66	0.79	2.42	2.9	0.005	0.61	0.0	0.04	19.36	0.00	1.902	8.20	2.05	3.8	96.2	0.0	-0.37	0.35	0.67	0.81	2.18	26321	3068	9	110	3	0	0	logfile
✔	8FTH	29426	2025-06-08	2023-01-12	3.17	3.39	3.15	3.4	0.006	1.01	0.0	0.05	18.20	0.01	2.298	6.33	1.28	5.3	94.2	0.5	-2.58	0.69	0.75	1.41	3.4	0.003	0.65	0.0	0.04	18.36	0.00	2.415	7.15	2.75	5.6	94.4	0.0	0.41	0.36	0.70	0.77	1.22	9780	1263	2	0	1	0	0	logfile
✔	8i10	35115	2025-06-11	2023-01-12	3.96	4.21	4.00	4.2	0.006	0.96	0.0	0.06	13.99	0.01	2.172	8.83	0.58	6.4	93.6	0.0	-1.07	0.76	0.78	2.85	4.2	0.003	0.69	0.0	0.04	14.86	0.00	2.380	6.48	3.40	5.5	94.5	0.0	-0.08	0.55	0.77	0.79	2.21	13196	1729	12	0	0	0	0	logfile
✔	8FTK	29439	2025-06-06	2023-01-12	4.56	5.56	4.83	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.004	0.61	0.0	0.04	4.83	0.00	2.311	3.25	0.00	10.1	89.9	0.0	0.27	1.25	0.86	0.83	—	7840	1584	1	0	0	0	0	logfile
✔	8FTi	29433	2025-06-07	2023-01-12	3.5	3.80	3.64	3.7	0.002	0.56	0.0	0.03	18.08	0.00	2.237	9.26	4.55	4.5	95.5	0.0	0.23	0.77	0.75	2.02	3.7	0.004	0.65	0.0	0.04	19.00	0.00	2.357	8.94	4.70	4.9	95.1	0.0	0.18	0.44	0.76	0.77	2.11	8126	737	2	97	0	0	0	logfile
✔	8i0Z	35114	2025-06-11	2023-01-12	4.33	4.58	4.35	4.4	0.007	0.92	0.0	0.05	12.71	0.01	2.066	6.59	0.29	6.8	93.2	0.0	-1.50	0.78	0.71	—	4.4	0.005	0.77	0.0	0.05	12.87	0.00	2.531	9.38	0.00	8.9	91.1	0.0	-1.04	2.56	0.77	0.72	—	13163	1725	12	0	0	0	0	logfile
✔	8FTE	29424	2025-06-13	2023-01-12	3.8	3.91	3.65	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.74	0.0	0.04	14.67	0.00	2.394	6.19	4.80	5.8	94.2	0.0	1.82	1.56	0.56	0.57	0.51	14564	2046	22	0	0	0	0	logfile
✔	8FTD	29423	2025-06-28	2023-01-11	2.76	3.03	2.89	3.1	0.003	0.58	0.0	0.04	17.82	0.00	2.126	9.45	2.88	4.5	95.5	0.1	0.05	0.56	0.69	1.71	3.0	0.004	0.64	0.0	0.04	19.08	0.00	2.209	5.14	2.20	5.6	94.4	0.0	0.16	2.01	0.67	0.86	2.46	32529	3823	13	117	6	0	0	logfile

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