Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FSZ	29422	2025-06-15	2023-01-11	3.79	3.93	3.74	3.7	0.007	1.06	0.0	0.06	13.52	0.01	2.443	5.44	0.00	7.5	92.5	0.0	-2.04	0.75	0.78	1.82	3.7	0.003	0.61	0.0	0.04	14.99	0.00	2.491	6.07	2.01	3.8	96.2	0.0	-0.29	1.27	0.77	0.82	2.43	16690	1975	10	0	20	0	0	logfile
✔	8i0N	35104	2025-06-08	2023-01-11	3.26	3.46	3.26	3.5	0.006	0.71	0.0	0.04	14.61	0.00	2.273	3.54	0.62	4.6	95.4	0.0	0.08	0.76	0.83	2.70	3.4	0.003	0.55	0.0	0.04	15.28	0.00	2.544	4.37	2.36	3.9	96.1	0.0	0.56	0.42	0.76	0.84	2.43	9141	1190	8	0	0	0	0	logfile
✔	8FTD	29423	2025-06-28	2023-01-11	2.76	3.03	2.89	3.1	0.003	0.58	0.0	0.04	17.82	0.00	2.126	9.45	2.88	4.5	95.5	0.1	0.05	0.56	0.69	1.71	3.0	0.004	0.64	0.0	0.04	19.08	0.00	2.209	5.14	2.20	5.6	94.4	0.0	0.16	2.01	0.67	0.86	2.46	32529	3823	13	117	6	0	0	logfile
✔	8C5Y	16444	2025-06-23	2023-01-10	3.35	3.63	3.45	3.6	0.005	0.71	0.0	0.05	14.44	0.00	2.111	8.14	0.18	3.4	96.3	0.3	0.01	0.70	0.75	2.46	3.6	0.006	0.66	0.0	0.05	16.43	0.00	2.314	6.35	1.72	3.5	96.3	0.2	0.05	0.51	0.73	0.85	2.01	15198	1868	16	0	4	0	0	logfile
✔	8i03	35093	2025-06-25	2023-01-10	3.2	3.33	3.12	3.2	0.010	0.90	0.0	0.05	19.65	0.01	1.837	16.34	15.70	7.2	92.7	0.1	-2.95	0.77	0.83	2.25	3.2	0.004	0.63	0.0	0.04	18.00	0.00	2.018	6.67	3.31	4.5	95.5	0.0	0.50	1.25	0.78	0.85	2.08	29430	3638	13	0	6	0	0	logfile
✔	8C5S	16442	2025-06-10	2023-01-10	3.75	3.51	3.78	3.7	0.007	1.04	0.0	0.09	18.48	0.01	1.842	7.99	0.00	4.1	95.9	0.0	0.62	0.66	0.78	2.02	3.7	0.005	0.63	0.0	0.04	19.22	0.00	2.330	7.85	2.61	5.1	94.8	0.1	0.43	1.03	0.67	0.79	1.70	11312	1260	6	62	1	0	0	logfile
✔	8FSP	29421	2025-06-15	2023-01-10	3.79	3.87	3.58	3.8	0.006	0.99	0.0	0.06	15.98	0.01	2.034	4.79	0.00	4.5	95.5	0.0	-1.60	0.78	0.81	2.38	3.7	0.004	0.71	0.0	0.04	16.86	0.00	2.557	7.93	1.36	3.9	96.1	0.0	-0.16	1.25	0.79	0.84	2.69	16685	1975	10	0	20	0	0	logfile
✔	8FSJ	29419	2025-06-08	2023-01-10	3.65	3.93	3.70	3.9	0.004	0.70	0.0	0.05	16.99	0.00	1.974	7.82	0.00	6.3	93.7	0.0	-1.15	0.70	0.74	1.70	3.9	0.003	0.95	0.0	0.04	14.36	0.01	2.391	8.50	2.86	6.1	93.9	0.0	-1.26	0.47	0.71	0.75	1.60	9855	1257	16	0	28	0	0	logfile
✔	8C5R	16441	2025-06-21	2023-01-10	3.7	3.73	3.75	3.7	0.006	0.59	0.0	0.04	8.09	0.00	0.567	18.93	0.00	3.1	96.6	0.3	-3.20	0.43	0.38	0.84	3.7	0.013	0.99	2.0	0.05	14.10	0.00	2.255	13.62	2.19	4.7	95.3	0.0	-1.45	1.29	0.60	0.70	1.63	24969	3178	3	0	0	0	0	logfile
✔	8C5Z	16445	2025-06-25	2023-01-10	3.8	4.17	3.98	4.1	0.004	0.70	0.0	0.05	14.17	0.00	2.063	12.18	0.17	3.1	96.7	0.2	-0.10	0.76	0.72	0.95	4.1	0.004	0.71	0.0	0.05	16.60	0.00	2.518	9.82	1.85	2.8	97.0	0.2	-0.27	1.16	0.80	0.82	1.01	16615	2044	16	0	4	0	0	logfile
✔	8C60	16449	2025-06-09	2023-01-10	3.4	2.44	3.66	3.2	0.004	0.80	0.0	0.05	17.71	0.01	1.750	16.32	0.80	3.4	96.6	0.0	-0.10	0.71	0.70	1.68	3.0	0.003	0.73	0.0	0.04	18.59	0.00	2.055	14.14	3.00	3.2	96.8	0.0	0.64	1.68	0.72	0.72	1.96	10393	1280	6	0	7	0	0	logfile
✔	8i02	35092	2025-06-17	2023-01-10	2.9	3.10	2.89	3.2	0.013	1.04	8.0	0.06	17.70	0.01	1.549	13.88	9.99	11.8	87.5	0.7	-4.49	0.69	0.75	2.41	3.2	0.004	0.76	0.0	0.04	18.24	0.01	2.001	7.51	3.19	8.0	91.9	0.1	-1.04	1.34	0.69	0.78	2.18	19876	2457	10	0	8	0	0	logfile
✔	8C5U	16443	2025-06-10	2023-01-10	3.62	3.71	3.64	3.7	0.005	0.77	0.0	0.05	18.43	0.00	2.189	7.66	0.00	3.0	97.0	0.0	1.11	0.78	0.81	1.61	3.7	0.003	0.63	0.0	0.04	19.13	0.00	2.456	8.52	1.31	2.7	97.3	0.0	1.13	1.05	0.78	0.82	1.43	11419	1248	6	71	1	0	0	logfile
✔	8FS3	29412	2025-06-18	2023-01-09	2.93	3.16	3.02	3.2	0.004	0.68	0.0	0.05	18.52	0.00	1.912	11.60	4.30	4.2	95.8	0.0	0.21	0.66	0.81	2.12	3.2	0.003	0.61	0.0	0.04	18.75	0.00	1.936	8.47	4.26	4.2	95.8	0.0	0.79	1.48	0.66	0.82	2.03	21222	2572	15	27	9	0	0	logfile
✔	8FS8	29417	2025-06-19	2023-01-09	3.04	3.37	3.13	3.3	0.002	0.53	0.0	0.04	14.33	0.00	2.003	9.25	3.29	3.1	96.9	0.0	0.66	0.66	0.75	2.11	3.3	0.003	0.60	0.0	0.04	17.19	0.00	1.900	9.71	3.68	4.9	95.1	0.0	0.26	1.01	0.69	0.78	1.95	21906	2582	16	55	9	0	0	logfile
✔	8FS7	29416	2025-06-19	2023-01-09	2.85	3.12	2.94	3.1	0.003	0.56	0.0	0.04	19.01	0.00	2.068	6.91	2.37	3.4	96.6	0.0	0.67	0.68	0.84	2.77	3.1	0.004	0.60	0.0	0.04	19.27	0.00	1.916	6.78	2.92	3.7	96.3	0.0	0.93	0.37	0.70	0.87	3.13	22195	2616	16	58	9	0	0	logfile
✔	8HZN	35089	2025-06-09	2023-01-09	3.25	2.62	3.25	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	3.0	0.003	0.71	0.0	0.04	14.25	0.00	2.518	11.26	3.83	6.4	93.5	0.1	-0.29	0.63	0.80	0.81	2.39	10200	1330	4	0	2	0	0	logfile
✔	8HZX	35091	2025-06-21	2023-01-09	2.68	2.91	2.71	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.003	0.58	0.0	0.04	16.35	0.00	2.492	5.91	1.84	6.4	93.4	0.2	-0.19	1.49	0.79	0.86	3.88	25320	3180	6	0	0	0	0	logfile
✔	8FRX	29410	2025-06-15	2023-01-09	2.7	3.26	2.58	3.0	0.004	0.77	0.0	0.05	12.62	0.00	2.253	3.29	0.00	3.1	96.9	0.0	0.20	0.80	0.85	3.56	2.9	0.003	0.61	0.0	0.04	14.03	0.00	2.573	3.92	1.41	2.7	97.3	0.0	0.84	0.37	0.80	0.87	3.51	16670	1975	10	0	20	0	0	logfile
✔	8FRZ	29411	2025-06-14	2023-01-09	2.75	3.28	2.70	3.1	0.003	0.79	0.0	0.05	13.71	0.00	2.290	3.53	0.00	5.4	94.6	0.0	0.31	0.79	0.84	3.21	3.1	0.003	0.59	0.0	0.04	15.08	0.00	2.589	4.41	2.68	4.6	95.4	0.0	0.65	1.22	0.79	0.85	2.98	16480	1955	10	0	20	0	0	logfile

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