Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HZX	35091	2025-06-21	2023-01-09	2.68	2.91	2.71	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.003	0.58	0.0	0.04	16.35	0.00	2.492	5.91	1.84	6.4	93.4	0.2	-0.19	1.49	0.79	0.86	3.88	25320	3180	6	0	0	0	0	logfile
✔	8FS3	29412	2025-06-18	2023-01-09	2.93	3.16	3.02	3.2	0.004	0.68	0.0	0.05	18.52	0.00	1.912	11.60	4.30	4.2	95.8	0.0	0.21	0.66	0.81	2.12	3.2	0.003	0.61	0.0	0.04	18.75	0.00	1.936	8.47	4.26	4.2	95.8	0.0	0.79	1.48	0.66	0.82	2.03	21222	2572	15	27	9	0	0	logfile
✔	8FRZ	29411	2025-06-14	2023-01-09	2.75	3.28	2.70	3.1	0.003	0.79	0.0	0.05	13.71	0.00	2.290	3.53	0.00	5.4	94.6	0.0	0.31	0.79	0.84	3.21	3.1	0.003	0.59	0.0	0.04	15.08	0.00	2.589	4.41	2.68	4.6	95.4	0.0	0.65	1.22	0.79	0.85	2.98	16480	1955	10	0	20	0	0	logfile
✔	8FS6	29415	2025-06-19	2023-01-09	2.9	3.17	3.02	3.2	0.004	0.68	0.0	0.05	18.46	0.00	2.045	8.16	2.53	3.6	96.4	0.0	-0.78	0.62	0.81	2.33	3.2	0.003	0.56	0.0	0.04	18.67	0.00	1.911	7.46	3.04	3.3	96.7	0.0	0.52	0.92	0.64	0.84	2.36	22246	2621	16	58	9	0	0	logfile
✔	8FRW	29409	2025-06-15	2023-01-09	2.92	3.40	2.84	3.2	0.005	0.79	0.0	0.05	13.23	0.01	2.312	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.002	0.57	0.0	0.04	14.17	0.00	2.651	2.60	0.81	1.9	98.1	0.0	1.29	0.59	0.79	0.86	3.02	16680	1975	15	0	20	5	0	logfile
✔	8FS4	29413	2025-06-18	2023-01-09	2.94	3.30	3.09	3.3	0.004	0.65	0.0	0.05	18.51	0.00	1.835	9.66	2.69	3.6	96.4	0.0	-0.22	0.66	0.78	1.97	3.3	0.005	0.69	0.0	0.04	18.81	0.00	1.875	9.11	3.86	3.8	96.2	0.0	0.36	0.49	0.63	0.79	2.19	21291	2539	16	42	9	0	0	logfile
✔	8HZC	35088	2025-06-04	2023-01-08	3.2	3.16	2.81	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	3.3	0.005	0.55	0.0	0.05	16.26	0.00	2.623	6.12	3.85	11.7	88.3	0.0	-3.70	0.91	0.37	0.86	3.62	3108	450	6	0	0	0	0	logfile
✔	8FRS	29406	2025-06-27	2023-01-08	3.96	3.29	3.03	3.2	0.002	0.54	0.0	0.04	14.45	0.00	2.208	5.19	0.00	7.1	92.6	0.3	-1.68	0.40	0.86	3.34	3.2	0.003	0.62	0.0	0.05	15.87	0.00	2.464	4.52	1.29	7.9	91.7	0.4	-1.67	0.29	0.42	0.87	2.89	31497	4120	14	0	0	0	0	logfile
✔	8HZB	35087	2025-06-04	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.002	0.58	0.0	0.05	18.09	0.00	2.598	6.07	2.33	10.0	90.0	0.0	-2.70	0.46	0.34	0.73	2.17	2976	432	6	0	0	0	0	logfile
✔	8FRP	29404	2025-06-06	2023-01-07	3.8	4.05	3.79	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.004	0.73	0.0	0.04	17.23	0.00	2.457	11.94	4.17	2.1	97.9	0.0	1.14	1.28	0.64	0.83	1.17	7488	934	5	0	21	0	0	logfile
✔	8FR0	29394	2025-06-07	2023-01-06	3.04	2.68	2.90	2.9	0.015	0.69	0.0	0.06	17.61	0.00	2.230	7.67	0.00	2.7	97.2	0.1	-0.10	0.62	0.84	1.71	2.9	0.002	0.50	0.0	0.04	16.54	0.00	2.560	6.66	2.68	2.3	97.7	0.0	0.00	1.21	0.63	0.85	1.83	8392	1064	16	0	4	10	0	logfile
✔	8FQH	29388	2025-06-07	2023-01-06	3.43	3.05	3.41	3.4	0.015	0.76	0.0	0.06	18.49	0.00	2.135	10.23	0.11	3.0	97.0	0.0	-0.41	0.52	0.74	1.18	3.4	0.004	0.64	0.0	0.05	17.87	0.00	2.396	9.34	4.25	3.3	96.7	0.0	-0.50	1.26	0.53	0.75	1.10	8384	1064	13	0	4	2	0	logfile
✔	8HYA	35085	2025-06-13	2023-01-06	3.4	3.97	3.57	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.003	0.67	0.0	0.04	16.49	0.00	2.485	11.46	3.38	5.8	94.2	0.0	1.31	0.47	0.58	0.74	1.02	14586	1856	4	0	6	0	0	logfile
✔	8FQD	29384	2025-06-07	2023-01-06	3.01	2.62	3.01	3.0	0.015	0.73	0.0	0.06	17.60	0.00	2.264	6.54	0.11	3.3	96.7	0.0	-0.68	0.64	0.83	1.81	3.0	0.004	0.65	0.0	0.05	17.35	0.00	2.533	6.96	2.24	4.5	95.4	0.1	-0.89	0.33	0.64	0.84	1.74	8384	1064	14	0	4	2	0	logfile
✔	8FQE	29385	2025-06-07	2023-01-06	3.14	2.62	3.07	3.0	0.015	0.83	0.0	0.06	18.71	0.00	2.110	11.48	0.22	3.8	96.1	0.1	-1.27	0.58	0.76	1.49	3.1	0.003	0.59	0.0	0.04	18.17	0.00	2.540	8.27	2.24	2.5	97.5	0.0	-0.51	0.33	0.57	0.74	1.27	8386	1064	16	0	4	4	0	logfile
✔	8C54	16433	2025-06-12	2023-01-06	2.52	2.38	2.50	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.003	0.51	0.0	0.04	17.21	0.00	2.551	5.45	2.10	2.0	98.0	0.0	0.92	0.15	0.72	0.84	4.89	14266	1928	12	0	4	330	0	logfile
✔	8FQL	29392	2025-06-27	2023-01-06	3.6	3.71	3.69	3.7	0.012	1.78	15.0	0.09	15.33	0.02	1.258	1.80	2.01	6.6	90.8	2.6	-2.43	0.54	0.69	1.76	3.7	0.004	0.76	0.0	0.04	17.86	0.00	2.461	8.84	3.06	6.6	92.7	0.7	-0.50	1.50	0.58	0.82	1.56	32652	4152	12	0	0	0	0	logfile
✔	8HYJ	35086	2025-06-24	2023-01-06	4.3	6.01	4.30	3.1	0.015	1.52	32.0	0.10	17.34	0.01	2.155	10.48	2.39	6.5	93.5	0.0	-2.61	0.80	0.54	—	3.1	0.004	0.76	0.0	0.04	16.56	0.00	1.989	18.05	0.00	6.5	93.4	0.0	-1.17	1.18	0.89	0.74	—	28568	3529	21	83	5	0	0	logfile
✔	8FR6	29396	2025-06-18	2023-01-06	2.5	3.15	2.54	2.9	0.005	0.83	0.0	0.05	22.07	0.00	2.125	3.16	0.98	2.5	97.5	0.0	0.44	0.80	0.79	3.20	2.9	0.003	0.68	0.0	0.04	14.95	0.00	2.500	6.03	2.39	3.2	96.8	0.0	0.66	0.45	0.80	0.85	3.29	21237	2448	60	0	159	0	0	logfile
✔	8FQG	29387	2025-06-07	2023-01-06	3.01	2.41	2.82	3.0	0.015	0.73	0.0	0.06	17.67	0.00	2.233	8.45	0.22	2.3	97.7	0.0	-0.50	0.62	0.85	2.69	3.0	0.004	0.55	0.0	0.05	17.36	0.00	2.560	6.90	2.68	2.6	97.4	0.0	-0.35	0.33	0.62	0.85	2.23	8392	1064	16	0	4	10	0	logfile

• ← previous
• Page 299 of 700
• next →