Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FPZ	29372	2025-06-07	2023-01-05	3.01	2.78	2.95	3.0	0.015	0.73	0.0	0.06	17.38	0.00	2.216	7.62	0.11	2.6	97.4	0.0	-0.61	0.59	0.82	2.41	3.0	0.003	0.54	0.0	0.04	16.53	0.00	2.570	7.02	2.13	2.9	97.1	0.0	-0.28	0.89	0.59	0.83	1.92	8392	1064	16	0	4	10	0	logfile
✔	8FPS	29369	2025-06-09	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.003	0.47	0.0	0.04	16.52	0.00	2.553	3.32	1.28	1.9	98.1	0.0	3.89	0.24	0.61	0.85	3.74	10602	1338	20	0	4	152	0	logfile
✔	8HXZ	35083	2025-06-12	2023-01-05	3.4	4.97	3.37	2.8	0.005	0.98	0.0	0.05	29.12	0.01	2.303	7.66	0.00	3.0	97.0	0.0	-1.57	0.89	0.77	0.71	2.8	0.005	0.85	0.0	0.04	28.98	0.01	2.413	17.75	2.73	2.9	97.1	0.0	-0.06	1.27	0.92	0.86	0.62	13740	879	11	328	0	0	0	logfile
✔	8FQ2	29375	2025-06-07	2023-01-05	3.14	2.91	2.99	3.1	0.015	0.76	0.0	0.06	15.95	0.00	2.034	9.44	0.67	4.7	95.3	0.0	-0.58	0.56	0.71	1.71	3.1	0.006	0.74	0.0	0.05	17.46	0.00	2.213	12.00	1.56	6.4	93.6	0.0	-1.36	1.26	0.59	0.78	1.82	8390	1064	12	0	4	0	0	logfile
✔	8FPV	29370	2025-06-07	2023-01-05	3.08	2.61	3.00	3.0	0.015	0.72	0.0	0.06	17.49	0.00	2.254	6.72	0.22	3.2	96.8	0.0	-0.33	0.60	0.84	2.73	2.9	0.003	0.58	0.0	0.04	17.50	0.00	2.527	6.72	3.02	2.9	97.1	0.0	-0.32	0.88	0.60	0.85	2.60	8394	1064	16	0	4	12	0	logfile
✔	8HY0	35084	2025-06-24	2023-01-05	3.1	2.99	3.00	3.0	0.007	0.98	0.0	0.05	23.11	0.01	2.090	13.59	0.00	4.3	95.7	0.0	-1.87	0.65	0.70	2.26	3.0	0.003	0.59	0.0	0.04	23.64	0.00	2.033	9.29	2.62	2.5	97.5	0.0	1.24	1.20	0.76	0.82	2.50	28821	2691	19	340	7	0	0	logfile
✔	8HXX	35081	2025-06-13	2023-01-05	3.0	3.66	3.03	3.3	0.005	0.99	0.0	0.05	16.31	0.01	1.982	9.53	0.18	3.1	96.9	0.0	-1.25	0.78	0.82	2.44	3.4	0.004	0.72	0.0	0.04	17.23	0.00	1.964	9.83	2.21	2.7	97.3	0.1	1.24	0.52	0.78	0.85	2.37	14873	1817	10	0	7	0	0	logfile
✔	8FQ6	29379	2025-06-07	2023-01-05	3.14	2.92	3.12	3.1	0.015	0.70	0.0	0.06	18.12	0.00	2.275	5.35	0.00	3.5	96.5	0.0	-0.55	0.67	0.85	2.02	3.1	0.003	0.54	0.0	0.04	17.72	0.00	2.603	5.41	3.80	2.9	97.1	0.0	-0.47	0.26	0.66	0.86	2.37	8398	1064	16	0	4	16	0	logfile
✔	8FQA	29381	2025-06-07	2023-01-05	3.35	2.93	3.34	3.2	0.015	0.74	0.0	0.06	19.08	0.00	2.225	9.52	0.34	3.4	96.6	0.0	0.12	0.61	0.76	1.45	3.2	0.002	0.58	0.0	0.04	18.35	0.00	2.575	8.33	2.68	2.7	97.3	0.0	-0.27	0.45	0.61	0.76	1.53	8386	1064	16	0	4	4	0	logfile
✔	8FPY	29371	2025-06-07	2023-01-05	2.98	2.45	2.88	3.0	0.015	0.70	0.0	0.06	19.34	0.00	2.069	8.15	2.68	1.9	98.1	0.0	-0.27	0.56	0.82	1.41	3.0	0.003	0.56	0.0	0.04	17.96	0.00	2.474	9.22	3.02	2.0	98.0	0.0	-0.25	0.89	0.56	0.82	1.70	8392	1064	16	0	4	10	0	logfile
✔	8FQ8	29380	2025-06-07	2023-01-05	3.11	2.81	3.14	3.1	0.015	0.74	0.0	0.06	18.29	0.00	2.160	8.39	0.34	3.4	96.6	0.1	-0.44	0.64	0.81	1.73	3.1	0.003	0.62	0.0	0.04	17.12	0.00	2.501	7.08	2.91	2.1	97.8	0.1	0.03	0.37	0.64	0.81	1.46	8392	1064	16	0	4	10	0	logfile
✔	8FQ3	29376	2025-06-07	2023-01-05	3.17	2.87	3.01	3.0	0.015	0.70	0.0	0.06	17.77	0.00	2.185	8.98	0.00	2.7	97.3	0.0	-0.25	0.56	0.74	2.37	3.1	0.003	0.54	0.0	0.04	16.98	0.00	2.466	8.45	4.14	3.4	96.6	0.0	-0.46	0.91	0.57	0.75	2.34	8386	1064	16	0	4	4	0	logfile
✔	8HXY	35082	2025-06-22	2023-01-05	3.1	3.10	3.10	3.2	0.007	0.94	0.0	0.05	23.63	0.01	2.090	13.36	0.10	4.4	95.6	0.0	-1.84	0.65	0.67	2.39	3.1	0.004	0.60	0.0	0.04	24.16	0.00	2.026	8.80	2.09	2.4	97.6	0.0	1.07	1.23	0.75	0.81	2.32	26263	2380	17	340	5	0	0	logfile
✔	8FPK	29367	2025-06-06	2023-01-04	2.76	2.16	2.74	2.8	0.018	0.76	0.0	0.06	18.10	0.00	2.164	6.20	1.05	2.3	97.7	0.0	-0.24	0.63	0.84	2.89	2.8	0.004	0.54	0.0	0.04	17.46	0.00	2.508	5.71	1.40	2.5	97.5	0.0	-0.25	0.86	0.62	0.84	2.67	8156	1024	8	0	8	0	0	logfile
✔	8HXC	35076	2025-06-15	2023-01-04	3.12	3.40	3.19	3.4	0.007	1.20	0.0	0.07	16.37	0.01	2.032	5.40	1.05	6.9	93.1	0.0	-1.46	0.64	0.75	2.25	3.4	0.003	0.69	0.0	0.05	16.57	0.00	2.453	6.63	3.66	7.0	93.0	0.0	-1.41	0.63	0.69	0.81	2.76	17374	2149	14	0	0	0	0	logfile
✔	8HXA	35074	2025-06-13	2023-01-04	3.04	3.23	3.02	3.2	0.005	1.07	0.0	0.06	15.67	0.01	2.023	5.42	0.18	5.1	94.6	0.3	-0.78	0.68	0.80	2.73	3.2	0.005	0.87	2.0	0.06	16.59	0.00	2.410	8.47	4.00	5.0	94.7	0.3	-0.57	0.40	0.68	0.82	3.46	14790	1842	12	0	0	0	0	logfile
✔	8FPG	29363	2025-06-09	2023-01-04	2.32	1.99	2.28	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.43	0.0	0.03	16.18	0.00	2.522	4.13	1.66	3.2	96.8	0.0	4.66	0.30	0.57	0.82	3.76	10674	1348	20	0	4	187	0	logfile
✔	8FPJ	29366	2025-06-22	2023-01-04	2.74	2.94	2.77	3.0	0.003	0.57	0.0	0.04	13.90	0.00	2.008	5.89	0.00	5.7	94.3	0.0	-0.24	0.69	0.82	2.96	3.0	0.003	0.55	0.0	0.04	16.61	0.00	2.331	3.66	1.11	5.9	94.1	0.0	0.41	0.94	0.71	0.85	2.66	25960	1596	6	0	1	0	13143	logfile
✔	8FPF	29362	2025-06-19	2023-01-04	3.27	2.55	3.31	3.0	0.008	0.89	0.0	0.04	20.44	0.02	2.235	5.93	0.00	6.9	93.1	0.0	-0.57	0.78	0.75	1.36	3.0	0.003	0.53	0.0	0.04	17.95	0.00	2.302	8.60	1.16	5.9	94.1	0.0	0.68	1.19	0.80	0.79	1.10	20478	1224	4	0	27	0	9854	logfile
✔	8HXB	35075	2025-06-13	2023-01-04	2.7	2.94	2.73	3.1	0.007	1.15	6.0	0.07	16.22	0.01	2.032	5.31	1.64	6.9	93.1	0.0	-1.43	0.56	0.69	2.89	3.1	0.004	0.68	0.0	0.05	16.99	0.00	2.532	7.25	4.56	5.8	94.2	0.0	-0.84	0.52	0.68	0.82	3.25	14892	1842	12	0	0	0	0	logfile

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