Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C4V	16430	2025-06-10	2023-01-04	3.14	3.23	3.09	3.2	0.007	1.01	7.0	0.07	19.43	0.01	1.935	13.76	2.51	4.3	95.7	0.0	-0.71	0.74	0.81	2.54	3.2	0.004	0.60	0.0	0.04	19.34	0.00	1.959	11.35	4.32	3.2	96.8	0.0	0.26	1.14	0.73	0.80	2.37	11731	1308	7	56	1	0	0	logfile
✔	8HXJ	35078	2025-06-23	2023-01-04	3.5	3.64	3.53	3.6	0.005	0.75	0.0	0.05	13.25	0.02	1.242	12.08	0.00	9.4	90.6	0.0	-1.89	0.80	0.83	3.09	3.5	0.003	0.65	0.0	0.05	14.40	0.00	2.424	7.55	1.52	9.2	90.7	0.1	-1.36	0.32	0.81	0.85	2.83	27639	3399	30	0	81	0	0	logfile
✔	8FPC	29361	2025-06-07	2023-01-04	2.78	2.77	2.79	2.9	0.015	0.72	0.0	0.06	18.67	0.00	2.235	5.65	2.35	2.2	97.8	0.0	-0.03	0.66	0.87	2.83	2.9	0.004	0.59	0.0	0.04	18.09	0.00	2.582	5.89	3.80	1.8	98.2	0.0	-0.08	0.85	0.66	0.87	2.76	8400	1064	16	0	4	18	0	logfile
✔	8FPL	29368	2025-06-06	2023-01-04	2.81	2.59	2.78	2.8	0.018	0.79	0.0	0.06	17.84	0.00	2.177	7.23	0.35	1.3	98.7	0.0	0.21	0.69	0.87	4.38	2.8	0.002	0.50	0.0	0.04	17.30	0.00	2.514	5.82	1.39	1.3	98.7	0.0	0.38	0.30	0.68	0.87	3.97	8178	1024	8	0	8	0	0	logfile
✔	8HXC	35076	2025-06-15	2023-01-04	3.12	3.40	3.19	3.4	0.007	1.20	0.0	0.07	16.37	0.01	2.032	5.40	1.05	6.9	93.1	0.0	-1.46	0.64	0.75	2.25	3.4	0.003	0.69	0.0	0.05	16.57	0.00	2.453	6.63	3.66	7.0	93.0	0.0	-1.41	0.63	0.69	0.81	2.76	17374	2149	14	0	0	0	0	logfile
✔	8BV5	16255	2025-06-05	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.67	0.0	0.04	19.21	0.00	1.941	12.11	4.99	6.1	93.7	0.1	-0.15	0.87	0.66	0.66	1.34	6296	767	4	0	3	0	0	logfile
✔	8C4U	16429	2025-06-10	2023-01-04	3.36	3.57	3.40	3.5	0.005	0.74	1.0	0.05	17.89	0.00	2.058	7.62	0.81	3.7	96.3	0.0	0.43	0.77	0.83	2.59	3.5	0.004	0.58	0.0	0.04	18.17	0.00	2.016	6.27	2.16	3.9	96.1	0.0	1.11	1.15	0.79	0.85	2.39	10952	1260	4	38	1	0	0	logfile
✔	8HX1	35071	2025-06-13	2023-01-03	3.29	3.53	3.35	3.5	0.005	0.63	0.0	0.04	13.93	0.00	2.182	3.33	0.00	1.2	98.8	0.0	3.33	0.75	0.83	2.28	3.5	0.002	0.42	0.0	0.03	15.69	0.00	2.568	3.91	0.57	1.5	98.5	0.0	3.88	0.34	0.64	0.77	1.71	14919	1926	12	0	0	0	0	logfile
✔	8FoZ	29357	2025-06-20	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.92	0.0	0.06	15.79	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	2.0	0.005	0.70	0.0	0.05	15.96	0.00	2.451	1.99	1.39	1.1	98.9	0.0	0.50	0.87	0.79	0.92	7.08	23648	3072	16	0	16	0	0	logfile
✔	8FoU	29354	2025-06-19	2023-01-03	3.3	3.70	3.38	3.7	0.016	0.60	0.0	0.04	16.43	0.00	0.884	25.35	0.00	4.8	95.2	0.0	-2.68	0.72	0.85	2.90	3.7	0.003	0.58	0.0	0.05	16.87	0.00	1.211	7.54	4.39	4.7	95.3	0.0	-1.07	0.46	0.72	0.84	1.56	23280	3048	24	0	0	0	0	logfile
✔	8HWZ	35069	2025-06-11	2023-01-03	3.56	3.98	3.88	4.1	0.003	0.62	0.0	0.04	14.52	0.01	2.103	12.00	0.00	0.9	99.1	0.0	4.47	0.78	0.84	1.82	4.1	0.004	0.83	1.0	0.03	16.97	0.00	2.201	10.96	3.38	1.8	98.2	0.0	4.36	0.42	0.75	0.83	1.68	13625	1751	12	0	0	0	0	logfile
✘	8HX0	35070	2025-06-13	2023-01-03	2.9	3.26	3.10	3.2	0.003	0.55	0.0	0.04	13.32	0.00	2.234	5.10	0.06	0.5	99.5	0.0	3.64	0.69	0.85	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14919	1926	12	0	0	0	0	logfile
✔	8HWS	35063	2025-06-16	2023-01-02	2.36	2.29	2.51	2.0	0.004	0.57	0.0	0.04	15.87	0.00	2.174	7.59	3.26	3.4	96.6	0.0	0.53	0.78	0.78	3.76	2.0	0.004	0.59	0.0	0.04	15.90	0.00	2.505	6.35	2.80	3.7	96.3	0.0	0.61	0.24	0.81	0.81	3.60	11511	1508	8	0	3	0	0	logfile
✔	8HWQ	35062	2025-06-18	2023-01-02	3.58	3.88	3.66	3.8	0.003	0.68	0.0	0.04	17.35	0.00	2.253	8.78	0.21	6.4	93.4	0.3	-1.29	0.60	0.75	1.95	3.8	0.003	0.67	0.0	0.04	17.97	0.00	2.528	7.36	1.78	5.5	94.5	0.0	-1.14	0.96	0.60	0.76	1.75	20783	2576	7	0	0	0	0	logfile
✔	8HWT	35064	2025-06-10	2023-01-02	2.91	2.42	2.96	2.1	0.003	0.56	0.0	0.04	12.84	0.00	2.241	6.29	0.22	4.0	96.0	0.0	0.29	0.72	0.74	3.81	2.1	0.004	0.63	0.0	0.04	15.21	0.00	2.591	5.60	2.97	4.4	95.6	0.0	0.35	0.32	0.79	0.82	3.56	8077	1058	5	0	0	0	0	logfile
✔	8C44	16416	2025-06-05	2022-12-31	3.2	3.59	3.21	3.5	0.020	1.66	0.0	0.10	12.79	0.02	2.336	10.29	0.54	3.1	96.9	0.0	1.28	0.67	0.71	2.67	3.5	0.004	0.67	0.0	0.04	16.16	0.00	2.433	11.35	2.32	2.6	97.4	0.0	1.48	1.54	0.64	0.74	2.20	5239	623	3	0	2	0	0	logfile
✔	8FoB	29344	2025-06-18	2022-12-30	2.71	2.96	2.78	3.0	0.024	1.57	0.0	0.54	21.84	0.01	2.073	8.34	0.39	8.3	91.7	0.0	-5.44	0.60	0.72	2.77	3.0	0.003	0.69	0.0	0.04	16.55	0.00	1.760	9.68	1.89	6.7	93.3	0.0	-0.15	1.11	0.57	0.74	2.67	20390	2376	12	0	46	52	0	logfile
✔	8FoJ	29351	2025-06-15	2022-12-30	4.8	3.41	4.44	3.3	0.009	0.99	1.0	0.04	13.63	0.01	2.138	9.71	0.05	3.7	96.3	0.0	0.08	0.80	0.61	—	3.3	0.003	0.72	0.0	0.04	14.11	0.00	2.433	10.57	0.11	3.7	96.3	0.0	0.19	1.30	0.82	0.66	—	17538	2151	7	21	1	0	0	logfile
✔	8FoC	29345	2025-06-16	2022-12-30	3.7	3.17	3.67	3.6	0.005	0.71	0.0	0.04	14.50	0.01	2.236	9.15	0.39	1.5	98.5	0.1	1.23	0.73	0.68	1.71	3.6	0.003	0.59	0.0	0.04	15.73	0.00	2.552	7.86	2.02	1.9	98.1	0.0	1.36	0.60	0.75	0.71	1.57	18382	2287	5	0	1	0	0	logfile
✔	8FoD	29346	2025-06-15	2022-12-30	3.8	3.04	3.66	3.8	0.006	0.86	0.0	0.05	14.42	0.01	2.167	9.55	0.27	2.8	97.1	0.1	0.31	0.69	0.61	1.32	3.8	0.003	0.61	0.0	0.04	15.91	0.00	2.588	8.65	1.75	2.2	97.8	0.0	0.94	1.92	0.68	0.60	1.26	17489	2224	5	0	1	0	0	logfile

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