Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FoJ	29351	2025-06-15	2022-12-30	4.8	3.41	4.44	3.3	0.009	0.99	1.0	0.04	13.63	0.01	2.138	9.71	0.05	3.7	96.3	0.0	0.08	0.80	0.61	—	3.3	0.003	0.72	0.0	0.04	14.11	0.00	2.433	10.57	0.11	3.7	96.3	0.0	0.19	1.30	0.82	0.66	—	17538	2151	7	21	1	0	0	logfile
✔	8FoK	29352	2025-06-16	2022-12-30	3.56	3.95	3.62	3.5	0.008	0.93	1.0	0.04	16.60	0.01	2.141	9.65	0.15	2.3	97.7	0.0	0.89	0.84	0.68	1.87	3.5	0.004	0.59	0.0	0.04	16.63	0.00	2.145	10.16	2.06	2.9	97.0	0.0	1.37	1.89	0.94	0.84	1.97	18827	2261	7	35	1	0	0	logfile
✔	8FoD	29346	2025-06-15	2022-12-30	3.8	3.04	3.66	3.8	0.006	0.86	0.0	0.05	14.42	0.01	2.167	9.55	0.27	2.8	97.1	0.1	0.31	0.69	0.61	1.32	3.8	0.003	0.61	0.0	0.04	15.91	0.00	2.588	8.65	1.75	2.2	97.8	0.0	0.94	1.92	0.68	0.60	1.26	17489	2224	5	0	1	0	0	logfile
✔	8HWA	35051	2025-06-22	2022-12-29	3.7	3.83	3.62	3.7	0.003	0.58	0.0	0.04	16.33	0.00	1.956	7.52	0.35	3.7	96.2	0.1	-1.15	0.79	0.85	2.20	3.7	0.003	0.60	0.0	0.04	16.64	0.00	1.904	5.67	2.50	3.7	96.3	0.0	-0.54	1.16	0.79	0.85	1.82	25740	3147	13	6	10	0	0	logfile
✘	8Fo1	29338	2025-06-20	2022-12-29	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24481	1596	4	0	0	0	12140	logfile
✔	8HWD	35054	2025-06-13	2022-12-29	3.3	3.51	3.30	3.5	0.004	0.73	0.0	0.04	18.03	0.00	2.199	14.55	1.25	8.6	91.3	0.1	-1.70	0.67	0.73	1.46	3.5	0.004	0.72	0.0	0.04	18.18	0.00	2.468	9.40	4.23	7.9	92.1	0.0	-1.42	0.43	0.68	0.76	1.50	15029	1834	12	0	6	0	0	logfile
✔	8HWE	35055	2025-06-15	2022-12-29	3.3	3.47	3.27	3.5	0.003	0.61	0.0	0.04	17.84	0.00	1.956	10.09	0.62	8.5	91.5	0.0	-1.52	0.72	0.80	1.70	3.5	0.003	0.61	0.0	0.04	17.63	0.00	1.920	8.03	3.85	8.7	91.3	0.0	-1.26	2.43	0.68	0.80	1.45	17247	2112	12	0	11	0	0	logfile
✔	8HWF	35056	2025-06-16	2022-12-29	3.3	3.50	3.27	3.4	0.003	0.66	0.0	0.04	17.29	0.00	2.039	8.34	0.15	4.7	95.3	0.0	-1.24	0.76	0.87	2.45	3.4	0.003	0.63	0.0	0.04	17.60	0.00	2.011	6.33	2.78	5.2	94.8	0.0	-0.42	0.33	0.76	0.87	2.40	18441	2251	13	6	9	0	0	logfile
✔	8HWG	35057	2025-06-16	2022-12-29	3.0	3.09	2.85	3.0	0.004	0.66	0.0	0.04	18.54	0.00	1.832	7.63	4.33	6.0	93.9	0.0	-1.90	0.76	0.87	3.15	3.0	0.004	0.79	1.0	0.05	18.59	0.00	1.840	5.56	3.53	5.7	94.3	0.0	-0.75	1.13	0.76	0.88	2.74	18110	2209	13	6	12	0	0	logfile
✔	8HWH	35058	2025-06-15	2022-12-29	3.6	3.88	3.70	3.8	0.003	0.71	0.0	0.04	17.52	0.00	2.198	10.76	0.42	4.9	95.0	0.1	-1.34	0.76	0.80	1.44	3.8	0.003	0.64	0.0	0.04	17.96	0.00	2.457	8.88	3.51	6.3	93.7	0.0	-0.88	1.19	0.77	0.81	1.20	16948	2079	7	6	0	0	0	logfile
✔	8C3Y	16415	2025-06-06	2022-12-29	3.8	4.37	3.83	4.1	0.018	1.57	0.0	0.10	10.95	0.01	2.226	7.90	0.48	3.7	96.0	0.3	0.34	0.79	0.76	0.80	4.1	0.003	0.74	0.0	0.04	16.03	0.00	2.460	14.05	1.93	5.0	94.7	0.3	0.84	2.75	0.78	0.77	1.15	7580	929	1	0	0	0	0	logfile
✔	8HWC	35053	2025-06-13	2022-12-29	3.3	3.53	3.32	3.5	0.003	0.60	0.0	0.04	16.49	0.00	2.245	10.08	0.30	6.5	93.5	0.0	-1.80	0.69	0.76	2.11	3.5	0.004	0.61	0.0	0.04	16.88	0.00	2.548	5.99	2.37	6.1	93.9	0.0	-1.44	1.18	0.71	0.83	2.04	14943	1836	6	0	0	0	0	logfile
✔	8HWB	35052	2025-06-22	2022-12-29	3.9	4.06	3.80	3.9	0.003	0.63	0.0	0.04	16.50	0.00	1.900	9.80	0.59	3.7	96.2	0.0	-1.13	0.80	0.84	1.70	3.9	0.003	0.60	0.0	0.04	16.62	0.00	1.909	6.51	2.19	4.0	95.9	0.0	-0.53	0.43	0.80	0.84	1.69	25740	3147	13	6	10	0	0	logfile
✔	8HW2	35049	2025-06-09	2022-12-28	3.65	4.12	3.83	4.0	0.011	0.85	0.0	0.05	15.68	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.003	0.76	0.0	0.04	16.43	0.00	2.303	10.37	2.21	6.2	93.8	0.0	-1.12	1.15	0.68	0.79	1.13	10853	1375	2	0	2	0	0	logfile
✔	8FNK	29316	2025-06-26	2022-12-27	3.7	4.05	3.77	3.8	0.003	0.60	0.0	0.04	18.34	0.00	2.198	10.18	0.32	3.9	96.1	0.0	0.42	0.77	0.75	0.86	3.8	0.002	0.59	0.0	0.04	18.58	0.00	2.391	7.08	2.62	3.1	96.9	0.0	1.17	1.17	0.78	0.77	0.89	30831	3656	11	94	0	0	0	logfile
✔	8FNi	29314	2025-06-24	2022-12-27	3.4	3.51	3.37	3.4	0.002	0.50	0.0	0.04	15.36	0.00	2.247	7.14	0.03	2.3	97.7	0.0	1.46	0.78	0.82	1.66	3.4	0.003	0.53	0.0	0.04	16.19	0.00	2.498	6.85	1.67	2.8	97.2	0.0	1.84	1.09	0.79	0.85	1.42	28858	3559	11	37	0	0	0	logfile
✔	8HVT	35048	2025-06-09	2022-12-27	3.6	3.70	3.54	3.6	0.009	1.16	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.7	0.003	0.68	0.0	0.04	15.98	0.00	2.453	7.32	1.31	4.5	95.5	0.0	1.94	0.37	0.61	0.87	2.30	10702	1366	8	0	12	0	0	logfile
✔	8FNE	29310	2025-06-28	2022-12-27	3.9	4.66	—	4.1	0.018	1.78	0.0	0.10	11.33	0.01	2.452	0.27	0.00	1.0	99.0	0.0	0.31	0.56	0.44	0.56	4.1	0.003	0.68	0.0	0.04	16.22	0.01	2.070	9.58	2.77	3.0	97.0	0.0	0.32	1.96	0.65	0.71	0.71	33508	2148	8	0	0	0	16644	logfile
✔	8FNF	29311	2025-06-15	2022-12-27	3.5	3.74	3.57	3.8	0.004	0.66	0.0	0.04	18.02	0.00	2.212	8.53	1.02	3.2	96.8	0.0	0.62	0.68	0.76	0.99	3.8	0.002	0.53	0.0	0.04	18.47	0.00	2.500	4.06	2.04	2.4	97.6	0.0	2.04	1.22	0.70	0.80	0.61	17080	2065	8	36	0	0	0	logfile
✘	8FN6	29306	2025-06-19	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.58	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22421	2729	8	46	1	0	0	logfile

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