Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FNi	29314	2025-06-24	2022-12-27	3.4	3.51	3.37	3.4	0.002	0.50	0.0	0.04	15.36	0.00	2.247	7.14	0.03	2.3	97.7	0.0	1.46	0.78	0.82	1.66	3.4	0.003	0.53	0.0	0.04	16.19	0.00	2.498	6.85	1.67	2.8	97.2	0.0	1.84	1.09	0.79	0.85	1.42	28858	3559	11	37	0	0	0	logfile
✘	8FN6	29306	2025-06-19	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.58	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22421	2729	8	46	1	0	0	logfile
✔	8FN1	29303	2025-06-07	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.57	0.0	0.04	13.32	0.00	2.545	5.92	2.38	2.7	97.3	0.0	1.39	0.47	0.78	0.80	3.64	8444	1116	6	0	0	0	0	logfile
✔	8FMX	29299	2025-06-09	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.98	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.16	0.00	2.554	3.56	0.17	2.5	97.5	0.0	1.05	1.23	0.88	0.88	2.37	10329	1335	9	0	12	0	0	logfile
✔	8FN4	29305	2025-06-18	2022-12-26	3.7	3.85	3.71	3.8	0.003	0.55	0.0	0.04	13.16	0.00	2.208	11.82	0.80	6.3	93.7	0.0	-0.53	0.76	0.77	1.39	3.8	0.003	0.63	0.0	0.04	15.50	0.00	2.402	8.58	1.97	6.1	93.8	0.0	0.24	1.13	0.77	0.78	0.83	20638	2625	6	0	0	0	0	logfile
✔	8FMY	29300	2025-06-08	2022-12-26	2.66	3.65	2.85	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.417	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.003	0.57	0.0	0.04	14.06	0.00	2.647	1.19	0.55	3.4	96.6	0.0	0.87	1.09	0.83	0.83	3.75	9597	1260	3	0	0	0	0	logfile
✔	8HVi	35044	2025-06-07	2022-12-26	3.04	4.28	3.02	3.2	0.005	0.92	0.0	0.05	15.48	0.01	2.255	9.87	0.62	3.8	96.1	0.1	-1.79	0.79	0.80	4.09	3.2	0.003	0.56	0.0	0.04	15.66	0.00	2.607	7.85	2.26	3.5	96.5	0.0	-0.08	0.28	0.88	0.92	3.98	8988	1148	6	0	1	0	0	logfile
✔	8FMZ	29301	2025-06-07	2022-12-26	2.59	2.79	2.62	2.8	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.006	0.69	0.0	0.05	14.42	0.00	2.491	4.32	1.70	2.6	97.4	0.0	1.27	1.08	0.66	0.87	4.09	8768	1126	6	0	0	0	0	logfile
✔	8FN0	29302	2025-06-07	2022-12-26	2.89	2.19	2.89	2.1	0.005	0.95	0.0	0.16	11.79	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.003	0.63	0.0	0.04	15.34	0.00	2.519	5.04	2.27	2.3	97.7	0.0	1.61	1.03	0.78	0.80	3.04	8502	1120	7	0	1	0	0	logfile
✔	8HUJ	35041	2025-06-06	2022-12-24	3.76	2.84	3.69	2.7	0.005	0.83	0.0	0.06	22.48	0.00	2.203	13.57	2.51	3.2	96.8	0.0	-0.39	0.74	0.78	1.43	2.7	0.004	0.62	0.0	0.04	22.08	0.00	2.467	11.62	6.64	3.1	96.9	0.0	0.46	0.45	0.74	0.78	0.79	7143	621	4	99	3	1	0	logfile
✔	8FMV	29297	2025-06-19	2022-12-24	3.34	2.46	—	1.9	0.007	0.86	0.0	0.04	19.29	0.01	2.200	6.02	0.10	6.1	93.9	0.0	0.37	0.80	0.82	2.31	1.9	0.003	0.49	0.0	0.04	17.37	0.00	1.892	7.38	1.43	5.4	94.5	0.1	0.92	0.44	0.80	0.83	2.15	20441	1234	4	0	25	0	9940	logfile
✔	8HUD	35035	2025-06-08	2022-12-23	3.43	3.64	3.43	3.6	0.005	0.84	0.0	0.06	20.89	0.00	2.284	10.27	0.56	9.8	90.2	0.0	-1.38	0.71	0.70	1.64	3.6	0.004	0.63	0.0	0.04	20.46	0.00	2.460	9.66	4.06	9.6	90.4	0.0	-0.70	1.26	0.73	0.76	1.38	8670	767	4	108	0	0	0	logfile
✘	8FLR	29284	2025-06-07	2022-12-22	2.94	3.07	2.85	3.2	0.003	0.59	0.0	0.04	13.80	0.00	2.201	7.84	0.11	3.0	97.0	0.0	1.23	0.65	0.73	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8928	1147	9	0	0	10	0	logfile
✔	8FLU	29287	2025-06-07	2022-12-22	2.76	3.00	2.82	3.1	0.004	0.70	0.0	0.05	13.28	0.00	2.223	12.74	0.35	3.0	96.9	0.1	0.56	0.64	0.74	3.48	3.1	0.003	0.61	0.0	0.04	15.94	0.00	2.425	9.08	1.85	2.7	97.3	0.0	1.07	0.96	0.63	0.77	2.70	8725	1141	9	0	0	5	0	logfile
✔	8FLT	29286	2025-06-06	2022-12-22	3.03	3.20	2.97	3.3	0.004	0.67	0.0	0.04	13.48	0.00	2.194	7.65	0.12	2.4	97.6	0.0	0.67	0.67	0.75	3.93	3.3	0.003	0.54	0.0	0.04	15.02	0.00	2.457	6.08	1.42	2.7	97.3	0.0	1.57	0.34	0.63	0.80	2.97	8086	1031	6	0	0	0	0	logfile
✔	8FLW	29288	2025-06-15	2022-12-22	3.58	3.64	3.60	3.7	0.005	0.86	5.0	0.06	17.20	0.01	1.644	4.67	0.81	4.5	95.3	0.3	0.01	0.76	0.79	2.93	3.7	0.003	0.70	0.0	0.05	14.66	0.00	2.430	4.34	2.37	4.4	95.6	0.0	-0.39	1.27	0.78	0.82	2.79	16868	1971	37	0	102	0	0	logfile
✔	8C2H	16390	2025-06-09	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.46	3.0	0.08	17.61	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.002	0.53	0.0	0.04	15.52	0.00	2.541	3.30	2.58	0.9	99.1	0.0	3.73	0.53	0.64	0.88	4.33	10071	1238	24	0	12	86	0	logfile
✔	8FLS	29285	2025-06-07	2022-12-22	3.09	3.25	3.02	3.3	0.004	0.70	1.0	0.05	14.01	0.00	2.239	7.40	1.11	2.5	97.5	0.0	1.08	0.62	0.69	2.57	3.3	0.003	0.53	0.0	0.04	15.55	0.00	2.562	5.49	1.55	2.8	97.2	0.0	1.50	0.29	0.60	0.77	2.38	8844	1144	6	0	0	0	0	logfile
✔	8FLQ	29283	2025-06-07	2022-12-22	2.55	2.78	2.64	2.8	0.003	0.57	0.0	0.04	13.87	0.00	2.209	7.54	0.21	2.1	97.9	0.0	1.35	0.64	0.70	3.93	2.9	0.003	0.51	0.0	0.04	15.87	0.00	2.577	6.35	0.75	2.3	97.7	0.0	1.65	0.30	0.64	0.82	3.20	8992	1146	9	0	0	14	0	logfile
✔	8C2R	16397	2025-06-26	2022-12-22	2.56	2.26	2.55	1.9	0.007	0.91	2.0	0.07	11.14	0.01	1.882	8.82	0.00	1.5	98.4	0.1	2.57	0.78	0.79	3.11	1.9	0.004	0.72	0.0	0.04	14.49	0.00	2.384	7.95	2.69	2.2	97.8	0.0	0.73	0.57	0.79	0.79	2.63	30928	3873	25	0	52	0	0	logfile

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