Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8C21	16387	2025-06-10	2022-12-21	3.6	4.19	3.27	3.8	0.003	0.58	0.0	0.04	14.61	0.00	2.223	10.61	0.07	5.2	94.4	0.4	0.00	0.65	0.67	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11954	1441	6	0	2	0	0	logfile
✔	8C1P	16379	2025-06-16	2022-12-21	2.9	2.28	2.61	2.7	0.009	1.48	6.0	0.09	17.09	0.01	2.288	4.78	4.44	3.9	96.1	0.0	-1.55	0.56	0.81	4.18	2.6	0.003	0.59	0.0	0.04	16.79	0.00	2.539	6.03	2.02	2.4	97.6	0.0	1.48	0.99	0.63	0.80	3.49	17849	2300	22	0	16	64	0	logfile
✔	8FKJ	29250	2025-06-21	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.1	0.003	0.64	0.0	0.04	5.36	0.00	2.348	4.20	0.00	13.0	86.9	0.1	-1.34	0.47	0.67	0.68	—	25001	5088	27	0	0	0	0	logfile
✔	8FLi	29279	2025-06-18	2022-12-21	3.8	4.18	4.01	3.9	0.005	0.68	0.0	0.04	26.20	0.01	1.508	15.79	0.26	16.4	82.9	0.7	-3.70	0.81	0.83	2.14	3.9	0.004	0.67	0.0	0.03	25.86	0.01	1.887	10.72	8.93	16.4	82.9	0.7	-3.12	1.20	0.82	0.83	2.33	21511	458	3	828	3	0	0	logfile
✔	8C1R	16381	2025-06-16	2022-12-21	3.2	2.92	3.03	3.1	0.011	1.15	0.0	0.07	17.11	0.01	2.068	7.15	3.23	4.7	95.2	0.1	0.17	0.61	0.84	3.26	3.1	0.004	0.57	0.0	0.04	16.00	0.00	2.518	5.59	2.79	3.4	96.6	0.0	1.45	0.93	0.70	0.89	2.69	18333	2331	19	0	20	6	0	logfile
✔	8C1V	16383	2025-06-22	2022-12-21	2.9	3.34	3.04	3.2	0.004	0.62	1.0	0.05	13.68	0.00	1.819	8.18	0.40	4.4	95.6	0.0	-0.12	0.75	0.64	1.69	3.1	0.003	0.64	0.0	0.05	15.22	0.00	2.406	7.84	2.40	4.4	95.6	0.0	-0.81	0.79	0.85	0.88	2.25	25590	3198	15	0	51	0	0	logfile
✔	8C20	16386	2025-06-10	2022-12-21	3.5	4.44	3.33	3.9	0.004	0.63	1.0	0.04	15.26	0.00	2.203	6.69	0.53	4.6	95.1	0.3	0.53	0.64	0.67	1.71	4.0	0.004	0.59	0.0	0.04	16.19	0.00	2.321	56.70	6.16	4.6	95.4	0.0	1.46	2.50	0.66	0.81	2.03	11908	1408	6	0	2	0	207	logfile
✔	8FL1	29264	2025-06-15	2022-12-21	3.75	3.87	3.78	3.9	0.005	0.70	0.0	0.05	16.10	0.00	2.259	3.93	0.00	2.5	97.5	0.0	0.22	0.77	0.79	2.27	3.9	0.003	0.73	0.0	0.05	14.99	0.00	2.402	5.55	2.77	4.4	95.6	0.0	0.04	1.32	0.80	0.82	1.93	16951	1972	37	0	108	0	0	logfile
✔	8C1Z	16385	2025-06-10	2022-12-21	3.8	4.18	3.39	3.8	0.003	0.55	0.0	0.04	15.09	0.00	1.892	7.89	0.22	5.0	94.6	0.4	-0.33	0.67	0.69	2.16	3.8	0.003	0.63	0.0	0.04	15.89	0.00	2.506	7.30	1.72	4.5	95.3	0.2	0.89	1.96	0.71	0.84	2.28	11863	1433	4	0	0	0	0	logfile
✔	8C1Q	16380	2025-06-16	2022-12-21	2.82	2.61	2.76	2.8	0.010	1.40	1.0	0.08	16.04	0.01	2.171	4.38	2.54	2.7	97.3	0.0	-0.72	0.64	0.82	3.35	2.8	0.006	0.65	0.0	0.04	16.68	0.01	2.471	6.20	2.59	2.0	98.0	0.0	1.26	0.55	0.71	0.86	2.83	18462	2315	23	0	18	25	0	logfile
✔	8HTi	35010	2025-06-06	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.003	0.54	0.0	0.04	16.46	0.00	2.562	3.77	2.62	3.0	97.0	0.0	0.82	0.37	0.78	0.85	2.32	7390	962	6	0	1	0	0	logfile
✔	8C1S	16382	2025-06-10	2022-12-21	3.0	2.82	2.85	3.1	0.012	1.29	0.0	0.08	17.43	0.03	2.234	5.50	1.87	6.0	93.9	0.1	1.35	0.61	0.86	4.05	3.0	0.004	0.61	0.0	0.04	16.60	0.00	2.486	4.52	2.24	4.2	95.8	0.0	3.13	1.30	0.67	0.90	3.46	10668	1318	21	0	14	8	0	logfile
✘	8HTT	35017	2025-06-04	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✔	8FJP	29245	2025-06-20	2022-12-20	3.3	3.44	3.36	3.4	0.004	0.89	0.0	0.06	17.12	0.01	2.224	6.09	0.67	5.7	94.3	0.0	-1.82	0.76	0.80	2.40	3.4	0.004	0.66	0.0	0.05	17.95	0.00	2.422	9.37	4.40	5.8	94.2	0.0	-1.15	0.46	0.76	0.81	2.09	23390	2932	3	0	3	0	0	logfile
✔	8C1B	16377	2025-06-11	2022-12-20	3.8	4.32	3.78	3.9	0.007	1.41	2.0	0.07	16.55	0.01	2.045	3.20	0.28	4.2	95.5	0.2	-0.06	0.76	0.70	0.87	3.9	0.003	0.62	0.0	0.04	14.01	0.00	2.399	5.00	0.97	3.9	96.1	0.0	0.99	0.55	0.77	0.72	1.22	12675	807	7	0	16	0	6106	logfile
✔	8FK0	29247	2025-06-11	2022-12-20	4.0	4.01	3.67	3.9	0.003	0.56	0.0	0.04	11.08	0.00	2.069	9.71	0.14	2.6	97.4	0.0	0.90	0.47	0.82	—	3.9	0.002	0.57	0.0	0.04	13.55	0.00	2.538	7.07	2.36	2.7	97.3	0.0	1.14	1.17	0.47	0.82	—	12628	1848	14	0	0	0	0	logfile
✔	8FK7	29249	2025-06-16	2022-12-20	4.3	4.38	4.11	4.2	0.003	0.56	0.0	0.05	11.64	0.00	2.156	10.45	0.00	0.7	99.3	0.0	2.48	0.56	0.82	—	4.2	0.003	0.61	0.0	0.05	12.30	0.00	2.516	9.47	0.00	0.8	99.2	0.0	2.35	0.54	0.57	0.83	—	19740	2720	20	0	0	0	0	logfile
✔	8HSY	35008	2025-06-21	2022-12-20	2.53	2.70	2.54	2.6	0.004	0.71	0.0	0.05	15.46	0.00	2.153	7.52	0.80	6.2	93.6	0.2	-0.75	0.83	0.86	3.64	2.6	0.003	0.57	0.0	0.05	16.29	0.00	2.553	4.89	1.74	6.9	92.9	0.2	-0.21	0.40	0.84	0.88	3.53	25320	3180	6	0	0	0	0	logfile
✔	8C1C	16378	2025-06-17	2022-12-20	4.1	5.17	4.17	4.0	0.008	1.30	1.0	0.06	14.93	0.01	2.072	2.46	0.00	3.2	96.7	0.2	-0.23	0.87	0.71	—	4.0	0.003	0.63	0.0	0.04	12.55	0.00	2.376	6.56	0.00	4.7	95.3	0.0	0.16	1.15	0.88	0.75	—	19267	1237	13	0	28	0	9284	logfile
✔	8FJS	29246	2025-06-19	2022-12-20	3.0	3.18	2.84	24.0	0.002	0.45	0.0	0.04	10.15	0.00	2.362	4.56	0.00	3.8	96.2	0.0	0.15	0.49	0.82	2.84	24.0	0.003	0.59	0.0	0.05	12.84	0.00	2.454	5.29	1.40	3.8	96.2	0.0	0.45	0.31	0.53	0.86	2.73	22550	3300	25	0	0	0	0	logfile

• ← previous
• Page 304 of 700
• next →