Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HSY	35008	2025-06-21	2022-12-20	2.53	2.70	2.54	2.6	0.004	0.71	0.0	0.05	15.46	0.00	2.153	7.52	0.80	6.2	93.6	0.2	-0.75	0.83	0.86	3.64	2.6	0.003	0.57	0.0	0.05	16.29	0.00	2.553	4.89	1.74	6.9	92.9	0.2	-0.21	0.40	0.84	0.88	3.53	25320	3180	6	0	0	0	0	logfile
✔	8HSi	34998	2025-06-04	2022-12-19	3.1	3.78	3.13	3.6	0.005	0.88	1.0	0.05	19.62	0.00	2.299	14.97	0.00	5.5	94.5	0.0	0.27	0.64	0.80	2.26	3.6	0.003	0.62	0.0	0.04	14.53	0.00	2.528	5.04	1.95	6.3	93.7	0.0	1.49	0.44	0.66	0.85	1.95	3516	405	5	0	10	0	0	logfile
✔	8HSG	34996	2025-06-21	2022-12-19	3.2	3.75	3.13	3.3	0.003	0.59	0.0	0.04	15.67	0.00	2.059	12.05	0.00	5.3	94.7	0.0	-0.30	0.85	0.83	1.70	3.3	0.003	0.61	0.0	0.04	17.10	0.00	2.010	9.38	1.41	5.6	94.4	0.0	-0.01	0.39	0.86	0.85	1.72	24636	2923	9	76	2	0	0	logfile
✔	8FJ5	29215	2025-06-16	2022-12-19	2.9	3.03	2.91	3.0	0.004	0.62	0.0	0.04	11.79	0.00	2.391	3.19	0.00	3.4	96.6	0.0	1.51	0.55	0.86	3.82	3.0	0.003	0.56	0.0	0.04	13.88	0.00	2.572	1.76	0.92	3.9	96.1	0.0	1.72	0.34	0.56	0.87	3.28	18980	2660	20	0	0	0	0	logfile
✔	8FJB	29221	2025-06-05	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.003	0.58	0.0	0.04	14.67	0.00	2.523	2.26	0.58	2.5	97.5	0.0	1.12	0.91	0.72	0.91	4.36	6330	802	5	0	0	0	0	logfile
✔	8HSJ	34999	2025-06-15	2022-12-19	3.6	4.38	3.43	3.4	0.008	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.005	0.87	0.0	0.05	16.81	0.01	1.504	23.55	3.29	4.9	94.7	0.4	-0.71	1.33	0.85	0.73	-0.05	17244	2166	12	0	18	0	0	logfile
✔	8HSH	34997	2025-06-20	2022-12-19	3.4	4.05	3.31	3.5	0.004	0.70	0.0	0.05	13.14	0.01	2.046	15.38	0.08	6.1	93.9	0.0	-0.86	0.86	0.79	1.42	3.5	0.004	0.66	0.0	0.04	15.29	0.00	1.991	10.88	1.65	5.8	94.2	0.0	-0.35	1.16	0.86	0.80	1.22	23072	2923	6	0	3	0	0	logfile
✔	8FJA	29220	2025-06-05	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.56	0.0	0.04	15.35	0.00	2.527	3.75	0.71	3.5	96.5	0.0	-0.19	0.37	0.71	0.90	4.32	6419	812	5	0	0	0	0	logfile
✔	8HSC	34993	2025-06-09	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.006	0.68	0.0	0.04	18.37	0.00	2.510	10.72	4.76	6.9	93.0	0.1	-0.89	0.34	0.63	0.83	1.70	10180	1345	7	0	0	0	0	logfile
✔	8HSB	34992	2025-06-04	2022-12-18	3.0	3.16	3.05	3.2	0.003	0.71	0.0	0.04	12.90	0.01	2.156	10.62	0.00	3.8	95.8	0.4	0.19	0.55	0.57	1.28	3.2	0.003	0.65	0.0	0.04	15.70	0.01	2.548	9.09	1.53	4.2	95.6	0.2	0.59	0.50	0.55	0.61	0.58	4278	533	2	0	0	0	0	logfile
✔	8FiX	29212	2025-06-22	2022-12-17	3.9	4.15	3.92	3.9	0.003	0.69	0.0	0.05	14.47	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.004	0.73	0.0	0.04	16.49	0.00	1.917	12.76	2.36	6.2	93.8	0.0	-1.04	2.15	0.82	0.71	0.47	25943	3185	9	49	3	0	0	logfile
✔	8HS2	34983	2025-06-05	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.006	0.71	0.0	0.05	15.44	0.00	2.452	9.36	1.98	5.5	94.5	0.0	0.70	0.36	0.67	0.87	2.44	5456	716	3	0	0	0	0	logfile
✔	8C0B	16357	2025-06-25	2022-12-16	3.98	2.77	4.01	2.1	0.003	0.79	0.0	0.05	12.77	0.01	2.172	3.80	0.51	3.9	95.9	0.2	-0.95	0.69	0.68	2.06	2.1	0.005	0.91	2.0	0.05	16.22	0.01	2.068	14.11	2.56	3.3	96.7	0.0	0.10	1.36	0.70	0.69	1.40	29816	3768	8	0	0	0	0	logfile
✔	8FiS	29209	2025-06-18	2022-12-16	3.18	3.36	3.24	3.5	0.006	0.86	1.0	0.05	19.55	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.003	0.66	0.0	0.04	14.36	0.00	2.446	6.01	2.16	5.3	94.6	0.0	-0.23	0.63	0.79	0.83	2.06	20356	2357	57	0	142	0	0	logfile
✔	8HRY	34982	2025-06-05	2022-12-16	3.11	3.51	3.06	3.4	0.003	0.66	0.0	0.04	15.76	0.01	2.228	9.30	0.74	4.9	95.1	0.0	0.28	0.54	0.84	2.28	3.4	0.003	0.69	0.0	0.04	16.29	0.00	2.432	7.55	4.59	5.3	94.7	0.0	0.25	0.26	0.54	0.84	2.33	6016	782	4	0	0	0	0	logfile
✔	8C06	16355	2025-06-22	2022-12-16	2.7	2.32	2.57	2.7	0.004	0.77	0.0	0.05	13.59	0.01	2.333	2.28	0.00	5.5	94.5	0.0	-1.51	0.67	0.75	2.13	2.7	0.005	0.73	0.0	0.04	16.10	0.01	2.178	4.96	1.85	6.6	93.4	0.0	0.25	1.09	0.75	0.83	2.76	25324	3298	8	0	6	0	0	logfile
✔	8HRU	34980	2025-06-05	2022-12-16	3.9	4.26	4.09	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.0	0.003	0.84	0.0	0.04	17.94	0.00	2.540	15.56	3.04	4.4	95.6	0.0	-0.24	0.76	0.75	0.70	0.45	4870	597	1	0	0	0	0	logfile
✔	8HRX	34981	2025-06-05	2022-12-16	2.89	3.36	2.87	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.004	0.71	0.0	0.04	16.99	0.00	2.482	7.90	3.23	6.9	93.1	0.0	-0.18	0.34	0.58	0.85	2.71	6013	780	4	0	0	0	0	logfile
✔	8C0E	16364	2025-06-16	2022-12-16	3.6	3.52	3.39	3.7	0.004	0.72	0.0	0.04	18.45	0.01	2.166	10.30	0.77	3.1	96.5	0.4	1.91	0.61	0.73	1.86	3.7	0.005	0.78	1.0	0.04	18.87	0.01	2.335	6.71	3.40	2.9	96.7	0.4	2.12	1.30	0.70	0.82	2.00	18385	2301	8	0	0	0	0	logfile
✘	8C07	16356	2025-06-05	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4974	644	5	0	1	0	0	logfile

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