Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HS3	34984	2025-06-06	2022-12-16	3.14	3.64	3.26	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.003	0.56	0.0	0.04	17.26	0.00	2.156	6.83	4.51	4.6	95.4	0.0	-0.25	0.32	0.52	0.76	1.93	8258	1124	5	0	0	0	0	logfile
✔	8BZo	16344	2025-06-05	2022-12-15	3.5	3.72	3.50	3.7	0.005	0.73	1.0	0.05	16.41	0.01	2.231	13.28	0.99	5.6	94.2	0.2	-1.51	0.64	0.75	1.73	3.7	0.003	0.59	0.0	0.04	17.01	0.00	2.490	8.47	3.37	4.3	95.7	0.0	-0.26	0.35	0.64	0.75	1.46	4834	614	3	0	0	0	0	logfile
✔	8HRJ	34975	2025-06-21	2022-12-15	3.1	3.46	3.30	3.4	0.003	0.62	0.0	0.05	14.23	0.01	2.203	5.91	0.26	4.9	94.8	0.3	-0.13	0.47	0.42	0.70	3.4	0.003	0.66	0.0	0.04	15.84	0.00	2.476	5.41	1.32	5.5	94.4	0.0	-0.42	1.72	0.65	0.78	1.58	24531	3126	3	0	0	0	0	logfile
✔	8FHT	29103	2025-06-06	2022-12-15	3.02	3.34	3.06	3.2	0.004	0.64	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.39	0.00	2.318	5.78	1.38	1.6	98.4	0.0	2.60	0.40	0.56	0.80	1.68	7006	936	4	0	4	0	0	logfile
✔	8C03	16354	2025-06-04	2022-12-15	3.89	4.09	3.71	4.1	0.006	0.67	0.0	0.04	13.12	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.73	0.0	0.04	16.35	0.00	2.569	13.63	3.62	1.7	98.3	0.0	2.82	1.48	0.56	0.78	1.42	3330	429	2	0	1	0	0	logfile
✔	8HRL	34977	2025-06-05	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	3.0	0.003	0.63	0.0	0.04	18.47	0.00	2.512	4.23	3.46	3.7	96.3	0.0	-0.56	0.56	0.61	0.73	1.53	6412	791	2	0	0	0	0	logfile
✔	8HRN	34979	2025-06-05	2022-12-15	3.9	4.18	3.97	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.003	0.75	0.0	0.04	18.11	0.00	2.565	13.56	2.09	3.0	97.0	0.0	-0.18	1.57	0.76	0.69	0.45	4870	597	1	0	0	0	0	logfile
✔	8HRi	34974	2025-06-21	2022-12-15	2.9	3.08	2.94	3.1	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.76	0.26	4.9	94.8	0.3	-0.13	0.39	0.39	0.61	3.1	0.004	0.72	0.0	0.05	16.24	0.01	2.435	5.87	1.50	5.4	94.6	0.0	-1.03	1.17	0.63	0.75	1.29	24531	3126	3	0	0	0	0	logfile
✔	8HRM	34978	2025-06-04	2022-12-15	2.56	2.74	2.65	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.004	0.81	0.0	0.05	15.72	0.00	2.541	7.71	3.78	4.7	95.3	0.0	-1.87	0.90	0.68	0.77	4.44	3567	476	8	0	0	19	0	logfile
✔	8FHW	29172	2025-06-23	2022-12-15	3.2	3.30	3.00	3.2	0.006	0.64	0.0	0.05	14.68	0.00	2.161	4.14	0.00	3.8	95.7	0.5	-0.11	0.79	0.82	4.11	3.2	0.003	0.51	0.0	0.04	15.70	0.00	2.437	2.87	1.15	4.3	95.7	0.0	0.68	0.35	0.82	0.85	3.85	26420	1728	12	4	4	0	12776	logfile
✘	8HRK	34976	2025-06-05	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6412	791	2	0	0	0	0	logfile
✔	8BYP	16330	2025-06-17	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.003	0.55	0.0	0.04	16.17	0.00	2.516	7.49	2.36	6.0	94.0	0.0	-0.39	1.10	0.70	0.82	2.92	19836	2421	2	0	0	0	0	logfile
✔	8C02	16353	2025-06-04	2022-12-15	4.09	4.26	4.02	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.81	0.0	0.04	13.63	0.00	2.361	15.19	0.22	4.1	95.9	0.0	1.88	1.51	0.59	0.77	—	4242	549	2	0	0	0	0	logfile
✔	8BZY	16345	2025-06-04	2022-12-15	3.24	3.52	3.22	3.6	0.005	0.55	0.0	0.04	12.93	0.00	2.297	6.68	2.42	2.4	97.6	0.0	2.10	0.48	0.78	2.48	3.6	0.002	0.48	0.0	0.04	13.87	0.00	2.618	5.30	2.64	2.8	97.2	0.0	3.01	0.72	0.48	0.78	2.17	4311	549	3	0	2	0	0	logfile
✔	8HQS	34953	2025-06-18	2022-12-14	3.2	3.55	3.31	3.4	0.003	0.57	0.0	0.04	11.43	0.00	2.203	11.20	0.60	5.2	94.8	0.0	0.73	0.63	0.59	1.74	3.4	0.004	0.58	0.0	0.04	14.07	0.00	2.301	8.60	1.15	5.2	94.7	0.1	0.63	2.46	0.70	0.76	1.92	19224	2387	7	0	0	0	0	logfile
✔	8FHH	29085	2025-06-17	2022-12-14	3.09	3.34	3.16	3.3	0.006	0.83	0.0	0.05	12.51	0.01	2.292	4.45	0.19	1.8	98.2	0.0	-2.13	0.68	0.90	3.44	3.3	0.003	0.50	0.0	0.04	14.85	0.00	2.476	4.60	1.72	1.4	98.6	0.0	1.89	0.51	0.64	0.89	3.04	19824	2424	8	0	12	0	0	logfile
✔	8FHK	29087	2025-06-18	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.64	0.0	0.04	18.17	0.01	1.797	10.29	1.45	8.3	91.7	0.0	-0.97	1.30	0.75	0.73	1.83	19947	1219	4	0	20	0	9827	logfile
✔	8HR5	34958	2025-06-06	2022-12-14	3.73	4.01	3.69	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.58	0.0	0.03	22.69	0.00	2.306	6.77	4.09	3.0	97.0	0.0	1.99	1.29	0.70	0.73	1.08	7595	711	5	123	0	0	0	logfile
✔	8HR1	34956	2025-06-10	2022-12-14	3.02	2.38	2.94	3.0	0.010	0.80	0.0	0.05	26.09	0.01	2.255	8.44	0.16	3.1	96.9	0.0	-5.09	0.84	0.81	2.82	2.9	0.004	0.60	0.0	0.03	28.21	0.00	2.095	7.98	2.66	2.7	97.3	0.0	1.70	1.26	0.90	0.89	1.90	12110	765	11	294	0	0	0	logfile
✔	8HQY	34954	2025-06-14	2022-12-14	3.05	3.63	2.81	2.2	0.011	1.01	0.0	0.06	27.35	0.01	2.238	4.33	0.14	5.8	94.2	0.0	-3.02	0.92	0.86	2.67	2.2	0.004	0.68	0.0	0.04	27.57	0.00	2.084	10.76	2.40	4.8	95.2	0.0	1.53	1.25	0.93	0.88	2.23	12302	848	12	272	0	0	0	logfile

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