Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BYN	16329	2025-06-04	2022-12-13	2.6	2.60	2.41	2.5	0.009	0.79	0.0	0.05	15.40	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.6	0.004	0.55	0.0	0.05	18.47	0.00	2.587	1.96	1.26	1.4	98.6	0.0	-1.86	0.41	0.43	0.93	6.14	3564	450	10	0	6	0	0	logfile
✔	8HQ7	34946	2025-06-09	2022-12-13	2.7	2.88	2.95	2.8	0.003	0.74	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	2.8	0.004	0.70	0.0	0.05	14.96	0.01	2.306	5.58	1.82	4.7	95.3	0.0	0.27	0.34	0.77	0.87	3.39	8292	1082	6	0	2	0	0	logfile
✔	8HQC	34947	2025-06-07	2022-12-13	3.89	4.15	3.90	4.1	0.003	0.69	0.0	0.04	11.77	0.01	2.223	6.60	0.12	4.1	95.9	0.0	0.00	0.73	0.80	2.24	4.1	0.003	0.71	0.0	0.04	14.67	0.00	2.422	6.47	2.41	4.0	96.0	0.0	0.16	0.47	0.73	0.82	1.62	8538	1186	6	0	0	0	0	logfile
✔	8HPT	34943	2025-06-06	2022-12-13	3.39	3.64	3.38	3.7	0.003	0.60	0.0	0.04	14.89	0.01	2.212	6.51	0.40	3.4	96.6	0.0	0.29	0.72	0.81	2.10	3.7	0.003	0.61	0.0	0.04	15.73	0.00	2.559	4.67	3.88	4.5	95.5	0.0	0.54	0.37	0.73	0.83	2.17	7897	1094	7	0	1	0	0	logfile
✔	8HPU	34944	2025-06-09	2022-12-13	2.56	2.71	3.20	2.6	0.003	0.71	0.0	0.05	13.60	0.01	2.215	10.12	0.11	5.0	95.0	0.0	-0.21	0.72	0.75	3.07	2.6	0.003	0.73	0.0	0.05	16.07	0.01	2.343	8.40	1.61	5.0	95.0	0.0	-0.06	0.93	0.74	0.78	2.98	8281	1080	6	0	1	0	0	logfile
✔	8HQE	34948	2025-06-07	2022-12-13	2.97	4.06	2.99	3.1	0.005	0.84	0.0	0.05	15.69	0.01	2.202	9.02	0.31	4.6	95.4	0.0	-1.77	0.75	0.80	3.13	3.1	0.003	0.61	0.0	0.04	16.27	0.00	2.437	8.05	1.25	3.7	96.3	0.0	-0.06	0.35	0.84	0.91	2.80	8903	1147	5	0	0	0	0	logfile
✘	8FH3	29078	2025-06-23	2022-12-13	4.3	3.61	3.35	2.7	0.010	1.02	0.0	0.06	11.99	0.01	2.008	16.10	0.00	7.4	92.5	0.1	-2.93	0.75	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26773	3642	7	0	4	0	0	logfile
✔	8BYi	16326	2025-06-11	2022-12-13	4.1	3.68	3.91	4.0	0.009	0.72	0.0	0.21	12.07	0.00	2.132	24.08	0.00	2.3	97.7	0.0	1.89	0.61	0.78	—	3.7	0.004	0.67	0.0	0.05	11.64	0.00	2.318	12.30	0.00	4.2	95.8	0.0	-0.48	1.14	0.64	0.80	—	13031	1600	15	0	12	9	0	logfile
✔	8HQM	34950	2025-06-07	2022-12-13	2.95	4.20	3.00	3.1	0.005	0.90	0.0	0.05	16.06	0.01	2.241	10.27	0.43	5.0	95.0	0.0	-1.84	0.81	0.84	3.87	3.1	0.003	0.59	0.0	0.04	16.52	0.00	2.585	10.04	1.72	3.8	96.2	0.0	-0.67	0.29	0.87	0.92	3.31	8618	1104	6	0	1	0	0	logfile
✔	8BYL	16327	2025-06-04	2022-12-13	3.5	3.68	3.45	3.7	0.004	0.66	0.0	0.05	16.83	0.00	2.304	9.11	1.05	4.8	95.2	0.0	-1.39	0.61	0.77	1.24	3.7	0.003	0.62	0.0	0.04	17.22	0.00	2.526	7.24	4.84	3.8	96.2	0.0	-1.39	0.38	0.60	0.75	1.40	4378	571	4	0	0	0	0	logfile
✔	8BYS	16332	2025-06-06	2022-12-13	3.28	3.60	3.29	3.7	0.004	0.56	0.0	0.04	13.51	0.00	2.195	6.52	0.00	6.0	94.0	0.0	-0.91	0.70	0.83	3.36	3.7	0.004	0.56	0.0	0.04	15.15	0.00	2.553	3.54	2.10	6.2	93.8	0.0	-0.94	0.28	0.67	0.83	2.44	7406	968	3	0	0	0	0	logfile
✔	8FGX	29077	2025-06-08	2022-12-13	2.62	3.60	2.58	3.0	0.003	0.45	0.0	0.04	9.99	0.00	2.400	1.82	0.00	1.6	98.4	0.0	1.41	0.90	0.88	4.89	3.0	0.004	0.56	0.0	0.04	12.05	0.00	2.401	3.03	0.00	2.1	97.9	0.0	1.27	0.99	0.88	0.87	4.46	9899	645	4	0	3	0	4873	logfile
✔	8HQN	34951	2025-06-07	2022-12-13	3.0	3.94	2.96	3.4	0.006	1.06	0.0	0.06	15.25	0.01	2.253	8.80	0.54	4.4	95.6	0.0	-1.62	0.75	0.78	3.18	3.4	0.003	0.60	0.0	0.04	15.82	0.00	2.453	8.51	1.40	3.9	96.0	0.1	-0.16	0.39	0.77	0.84	3.28	8605	1107	6	0	1	0	0	logfile
✔	8HPo	34935	2025-06-24	2022-12-12	2.6	2.84	2.68	3.0	0.008	0.98	13.0	0.06	19.27	0.01	1.346	14.56	11.26	6.4	93.2	0.4	-3.79	0.72	0.77	2.37	3.0	0.003	0.66	0.0	0.04	18.71	0.00	1.920	7.34	4.49	4.7	95.2	0.1	0.09	0.55	0.71	0.78	2.08	27951	3571	14	0	6	0	0	logfile
✔	8HPM	34933	2025-06-11	2022-12-12	3.82	4.17	3.98	4.0	0.012	1.82	5.0	0.10	12.98	0.01	2.225	7.78	0.65	6.4	93.5	0.1	-2.52	0.67	0.78	1.71	4.0	0.004	0.80	0.0	0.05	14.94	0.00	2.408	11.07	2.44	4.2	95.8	0.0	-0.62	1.19	0.67	0.78	1.67	12803	1758	8	0	4	0	0	logfile
✔	8HPS	34942	2025-06-11	2022-12-12	3.51	3.85	3.71	3.8	0.012	1.77	6.0	0.10	13.07	0.01	2.209	4.87	0.38	3.9	96.1	0.0	-1.71	0.65	0.81	2.79	3.8	0.003	0.71	0.0	0.04	15.53	0.00	2.000	7.77	3.21	3.2	96.8	0.0	0.78	1.11	0.65	0.82	1.69	12984	1722	8	0	6	0	0	logfile
✔	8HPA	34929	2025-06-12	2022-12-12	3.01	3.41	3.24	3.4	0.002	0.55	0.0	0.04	15.99	0.00	2.144	9.19	0.00	9.3	90.0	0.7	-0.92	0.67	0.71	2.15	3.4	0.004	0.70	0.0	0.04	18.15	0.00	2.459	9.26	2.56	9.5	89.9	0.6	-1.03	1.12	0.65	0.76	2.21	14122	1648	5	33	0	0	0	logfile
✔	8HPR	34941	2025-06-11	2022-12-12	3.75	4.12	3.93	4.0	0.012	1.78	1.0	0.10	13.56	0.01	2.201	7.88	0.64	5.4	94.5	0.1	-2.19	0.67	0.78	1.77	4.0	0.004	0.79	0.0	0.05	14.83	0.00	1.927	10.80	3.52	4.3	95.7	0.0	-0.01	0.85	0.68	0.80	1.64	12645	1696	8	0	6	0	0	logfile
✔	8HPL	34932	2025-06-11	2022-12-12	4.29	4.66	4.33	4.3	0.012	1.78	1.0	0.09	12.90	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.3	0.003	0.70	0.0	0.04	11.99	0.00	2.397	7.39	0.00	4.5	95.5	0.0	-0.19	1.14	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	8HPF	34931	2025-06-09	2022-12-12	2.34	2.45	2.94	2.4	0.003	0.69	0.0	0.04	17.78	0.01	2.244	10.57	7.09	5.0	95.0	0.0	-0.06	0.71	0.75	2.92	2.4	0.004	0.73	0.0	0.05	17.47	0.01	2.449	10.69	4.08	6.1	93.9	0.0	-0.17	0.31	0.73	0.79	2.66	8268	1079	6	0	1	0	0	logfile

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