Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HPF	34931	2025-06-09	2022-12-12	2.34	2.45	2.94	2.4	0.003	0.69	0.0	0.04	17.78	0.01	2.244	10.57	7.09	5.0	95.0	0.0	-0.06	0.71	0.75	2.92	2.4	0.004	0.73	0.0	0.05	17.47	0.01	2.449	10.69	4.08	6.1	93.9	0.0	-0.17	0.31	0.73	0.79	2.66	8268	1079	6	0	1	0	0	logfile
✔	8HPS	34942	2025-06-11	2022-12-12	3.51	3.85	3.71	3.8	0.012	1.77	6.0	0.10	13.07	0.01	2.209	4.87	0.38	3.9	96.1	0.0	-1.71	0.65	0.81	2.79	3.8	0.003	0.71	0.0	0.04	15.53	0.00	2.000	7.77	3.21	3.2	96.8	0.0	0.78	1.11	0.65	0.82	1.69	12984	1722	8	0	6	0	0	logfile
✔	8BY2	16319	2025-06-16	2022-12-11	3.18	3.61	3.24	3.6	0.003	0.58	0.0	0.04	19.61	0.00	2.211	4.78	0.00	5.0	95.0	0.0	1.83	0.62	0.83	0.69	3.6	0.003	0.58	0.0	0.04	18.63	0.00	2.258	4.61	1.72	5.0	95.0	0.0	1.50	0.90	0.59	0.82	0.75	17356	1094	4	0	8	0	8802	logfile
✔	8HoY	34927	2025-06-12	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.003	0.72	0.0	0.04	16.81	0.01	2.449	12.18	3.22	8.8	91.1	0.1	-1.95	0.81	0.53	0.61	1.16	13454	1650	3	0	0	0	0	logfile
✔	8FFY	29070	2025-06-06	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.73	0.0	0.05	19.20	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.003	0.58	0.0	0.04	19.11	0.00	2.523	6.99	3.54	3.0	97.0	0.0	0.33	0.79	0.73	0.80	1.20	7442	770	5	61	2	0	0	logfile
✔	8FFV	29068	2025-06-27	2022-12-10	3.01	3.71	3.03	3.3	0.023	1.85	1.0	0.10	11.22	0.02	1.804	1.07	0.00	1.2	98.7	0.1	0.64	0.88	0.86	2.83	3.3	0.003	0.60	0.0	0.04	13.07	0.00	1.863	2.62	0.29	2.9	97.1	0.0	1.09	1.09	0.86	0.84	2.43	31631	1942	7	0	5	0	15804	logfile
✔	8FFW	29069	2025-06-27	2022-12-10	3.23	4.02	3.25	3.7	0.024	1.95	1.0	0.10	11.36	0.02	1.820	1.30	0.00	1.4	98.5	0.1	0.37	0.86	0.79	2.39	3.6	0.002	0.62	0.0	0.04	13.47	0.00	1.750	3.04	0.46	3.2	96.8	0.0	1.04	3.43	0.85	0.78	2.29	31497	1939	7	0	5	0	15742	logfile
✔	8Ho9	34923	2025-06-12	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.003	0.56	0.0	0.05	17.41	0.00	2.589	2.18	1.81	3.8	96.2	0.0	0.61	0.19	0.70	0.87	5.37	13463	1622	4	0	0	347	0	logfile
✔	8HoB	34924	2025-06-12	2022-12-09	2.19	2.69	2.22	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.004	0.57	0.0	0.05	17.32	0.00	2.559	2.96	1.59	3.2	96.8	0.0	0.64	0.15	0.71	0.88	5.74	13449	1622	4	0	0	333	0	logfile
✔	8Ho7	34921	2025-06-11	2022-12-09	2.59	2.93	2.59	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.57	0.0	0.05	17.87	0.00	2.563	3.27	2.74	3.8	96.2	0.0	0.28	0.16	0.64	0.88	5.13	13227	1620	4	0	0	112	0	logfile
✘	8Ho8	34922	2025-06-12	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.60	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13454	1618	6	0	4	309	0	logfile
✔	8FFL	29046	2025-06-17	2022-12-09	3.47	3.31	3.43	3.4	0.002	0.49	0.0	0.03	14.39	0.00	2.199	3.88	0.14	1.1	98.9	0.0	1.72	0.70	0.86	3.45	3.4	0.005	0.54	0.0	0.04	15.38	0.00	2.517	3.29	1.14	2.3	97.7	0.0	1.94	0.25	0.70	0.86	2.99	19683	2426	8	0	4	0	0	logfile
✔	8BXF	16317	2025-06-11	2022-12-08	3.4	3.97	3.46	3.9	0.004	0.95	0.0	0.06	13.47	0.01	1.507	5.27	0.38	4.3	95.7	0.0	-2.13	0.67	0.81	3.05	3.9	0.067	1.11	0.0	0.04	15.15	0.01	2.526	7.57	2.35	3.4	96.6	0.0	0.26	0.89	0.71	0.84	2.03	12692	1630	10	0	5	0	0	logfile
✔	8BXB	16314	2025-06-11	2022-12-08	3.9	4.23	3.82	4.2	0.009	0.96	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.004	0.69	0.0	0.05	14.56	0.00	2.481	10.40	3.01	4.7	95.3	0.0	-0.95	0.87	0.67	0.80	1.45	12547	1630	14	0	5	4	0	logfile
✔	8FFi	29043	2025-06-28	2022-12-08	2.7	2.08	—	1.8	0.003	0.56	0.0	0.04	17.75	0.00	1.987	5.65	0.00	5.3	94.7	0.0	-0.88	0.84	0.81	3.04	1.8	0.004	0.63	0.0	0.04	19.45	0.00	1.978	4.56	2.20	6.0	93.9	0.0	-0.57	0.31	0.85	0.81	2.75	32540	3552	20	164	4	0	0	logfile
✔	8HNK	34914	2025-06-08	2022-12-08	3.01	3.38	2.90	3.2	0.004	0.61	0.0	0.04	13.49	0.00	2.176	8.10	0.00	4.3	95.7	0.0	0.15	0.80	0.87	3.03	3.2	0.003	0.60	0.0	0.04	15.18	0.00	2.175	4.42	2.14	3.4	96.6	0.0	0.92	0.94	0.81	0.90	2.73	9492	1210	7	0	2	0	0	logfile
✔	8BXE	16316	2025-06-11	2022-12-08	3.9	4.10	3.87	4.1	0.003	0.72	0.0	0.05	12.69	0.00	2.220	12.46	0.00	4.6	95.4	0.0	-1.05	0.64	0.79	1.63	4.1	0.003	0.79	0.0	0.05	15.63	0.00	2.220	11.82	2.93	4.8	95.2	0.0	-0.79	0.49	0.64	0.80	1.19	12550	1630	14	0	5	4	0	logfile
✔	8FFK	29045	2025-06-20	2022-12-08	2.82	3.10	2.92	3.1	0.004	0.56	0.0	0.04	10.75	0.00	2.195	7.52	2.19	1.2	98.8	0.0	1.77	0.59	0.76	3.68	3.1	0.004	0.59	0.0	0.04	14.79	0.00	2.454	6.93	2.35	1.3	98.7	0.0	1.87	0.47	0.73	0.87	2.85	23482	3098	3	0	0	0	0	logfile
✔	8BXG	16318	2025-06-15	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.57	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.002	0.54	0.0	0.03	18.90	0.00	2.323	3.09	1.61	7.0	93.0	0.0	1.49	0.19	0.66	0.81	1.79	17301	1093	4	0	6	0	8796	logfile
✔	8HNV	34919	2025-06-08	2022-12-08	3.1	2.71	3.05	2.9	0.002	0.57	0.0	0.04	20.86	0.00	2.103	11.63	0.00	4.3	95.7	0.0	-0.35	0.57	0.66	1.19	2.9	0.003	0.59	0.0	0.04	21.70	0.00	2.561	9.83	2.65	6.0	94.0	0.0	-0.26	1.53	0.59	0.71	1.07	9196	832	5	128	0	0	0	logfile

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