Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HNV	34919	2025-06-08	2022-12-08	3.1	2.71	3.05	2.9	0.002	0.57	0.0	0.04	20.86	0.00	2.103	11.63	0.00	4.3	95.7	0.0	-0.35	0.57	0.66	1.19	2.9	0.003	0.59	0.0	0.04	21.70	0.00	2.561	9.83	2.65	6.0	94.0	0.0	-0.26	1.53	0.59	0.71	1.07	9196	832	5	128	0	0	0	logfile
✔	8HNM	34916	2025-06-07	2022-12-08	2.94	3.31	2.90	3.2	0.003	0.60	0.0	0.04	15.74	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.003	0.65	0.0	0.04	16.30	0.00	2.502	4.90	2.65	5.7	94.3	0.0	0.42	0.34	0.77	0.88	2.12	8784	1117	6	0	3	0	0	logfile
✔	8BXG	16318	2025-06-15	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.57	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.002	0.54	0.0	0.03	18.90	0.00	2.323	3.09	1.61	7.0	93.0	0.0	1.49	0.19	0.66	0.81	1.79	17301	1093	4	0	6	0	8796	logfile
✔	8HNK	34914	2025-06-08	2022-12-08	3.01	3.38	2.90	3.2	0.004	0.61	0.0	0.04	13.49	0.00	2.176	8.10	0.00	4.3	95.7	0.0	0.15	0.80	0.87	3.03	3.2	0.003	0.60	0.0	0.04	15.18	0.00	2.175	4.42	2.14	3.4	96.6	0.0	0.92	0.94	0.81	0.90	2.73	9492	1210	7	0	2	0	0	logfile
✔	8FEZ	29035	2025-06-15	2022-12-07	3.72	2.90	3.94	3.1	0.018	1.78	1.0	0.10	9.25	0.01	2.110	7.96	0.22	4.6	95.4	0.0	-1.24	0.74	0.70	1.40	2.1	0.003	0.67	0.0	0.04	11.97	0.00	2.535	6.05	3.05	6.1	93.8	0.0	-1.30	1.23	0.75	0.71	1.24	17515	2843	3	0	0	0	0	logfile
✔	8HND	34911	2025-06-04	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.27	4.0	0.07	14.37	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.004	0.61	0.0	0.04	15.49	0.00	2.583	6.87	3.66	2.7	97.3	0.0	1.32	1.93	0.41	0.66	2.07	4370	560	3	0	4	0	0	logfile
✔	8BWo	16292	2025-06-08	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.003	0.61	0.0	0.04	16.30	0.00	1.923	6.87	1.80	1.9	98.1	0.0	1.26	1.80	0.68	0.85	2.34	9712	1211	2	0	4	0	0	logfile
✔	8FF2	29036	2025-06-05	2022-12-07	2.87	2.65	2.25	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.005	0.71	0.0	0.05	17.43	0.00	2.395	7.96	2.41	3.6	96.4	0.0	-2.94	2.67	0.52	0.83	6.07	5650	380	10	0	0	0	2740	logfile
✔	8BWR	16295	2025-06-08	2022-12-07	4.0	4.17	3.95	4.1	0.010	0.93	0.0	0.05	13.67	0.01	2.203	7.58	0.96	3.7	96.3	0.0	-1.63	0.65	0.78	—	4.1	0.003	0.73	0.0	0.04	16.34	0.00	2.532	11.19	2.78	2.2	97.8	0.0	1.28	1.92	0.70	0.80	—	9570	1195	2	0	1	0	0	logfile
✔	8BWP	16293	2025-06-08	2022-12-07	3.6	3.85	3.55	3.8	0.011	0.90	1.0	0.06	12.54	0.01	2.213	4.13	0.48	2.9	97.1	0.0	-1.51	0.68	0.83	2.86	3.8	0.003	0.63	1.0	0.04	15.52	0.00	2.509	7.58	1.63	2.0	98.0	0.0	1.64	1.12	0.69	0.79	1.50	9578	1195	2	0	1	0	0	logfile
✔	8HNB	34909	2025-06-04	2022-12-07	3.53	4.14	3.48	4.0	0.008	1.39	2.0	0.08	14.65	0.02	2.382	14.25	2.09	2.3	97.7	0.0	-0.66	0.58	0.74	1.11	4.1	0.004	0.83	0.0	0.04	14.23	0.00	2.578	9.08	2.35	2.3	97.7	0.0	1.39	1.62	0.47	0.70	1.62	4083	562	3	0	3	0	0	logfile
✔	8BWQ	16294	2025-06-08	2022-12-07	3.9	4.13	3.88	4.0	0.009	0.89	0.0	0.05	13.09	0.01	2.238	4.90	0.00	3.0	97.0	0.0	-1.27	0.70	0.84	2.39	4.0	0.003	0.73	0.0	0.04	16.13	0.00	2.448	11.14	2.50	2.5	97.5	0.0	1.63	1.85	0.70	0.83	1.02	9576	1195	2	0	1	0	0	logfile
✔	8HN8	34908	2025-06-07	2022-12-07	3.0	3.50	3.16	3.5	0.003	0.59	0.0	0.04	13.37	0.00	2.225	4.83	0.41	3.1	96.9	0.0	0.55	0.57	0.78	3.07	3.5	0.002	0.52	0.0	0.04	15.67	0.00	2.545	3.41	2.18	3.8	96.2	0.0	0.78	0.36	0.57	0.78	2.72	8860	1120	6	0	1	0	0	logfile
✔	8HNC	34910	2025-06-04	2022-12-07	3.73	3.95	3.70	3.9	0.008	1.28	2.0	0.08	15.07	0.02	2.079	14.23	0.49	3.9	96.1	0.0	-2.79	0.58	0.82	2.00	3.9	0.003	0.67	0.0	0.04	14.92	0.00	2.521	8.85	3.16	2.3	97.7	0.0	1.37	1.01	0.55	0.82	1.34	4272	570	3	0	4	0	0	logfile
✔	8FF5	29040	2025-06-24	2022-12-07	3.13	3.79	3.26	3.4	0.003	0.66	0.0	0.04	19.54	0.00	1.886	16.53	0.95	7.2	92.2	0.7	-0.20	0.84	0.73	1.80	3.4	0.004	0.77	1.0	0.04	19.70	0.00	2.089	11.61	1.75	6.8	92.7	0.5	0.08	1.28	0.87	0.82	2.12	27124	2957	15	136	0	0	0	logfile
✔	8FF3	29037	2025-06-04	2022-12-07	3.09	2.31	1.83	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.003	0.50	0.0	0.05	11.82	0.00	2.619	4.58	0.93	0.7	99.3	0.0	-2.04	0.47	0.36	0.73	4.23	2190	150	6	0	0	0	1122	logfile
✔	8BX5	16308	2025-06-11	2022-12-07	4.2	4.41	3.95	4.3	0.003	0.81	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	4.3	0.003	0.77	0.0	0.05	13.14	0.00	2.439	12.01	0.00	3.5	96.4	0.1	-0.56	2.12	0.64	0.76	—	12527	1630	13	0	4	4	0	logfile
✔	8BW0	16279	2025-06-04	2022-12-06	3.11	3.43	3.06	3.4	0.005	0.80	0.0	0.05	19.99	0.01	2.189	10.70	0.00	5.1	94.9	0.0	0.61	0.75	0.72	1.84	3.4	0.003	0.85	0.0	0.05	14.98	0.01	2.374	11.33	3.24	5.9	94.1	0.0	0.12	0.51	0.78	0.77	2.08	3201	398	7	0	13	0	0	logfile
✔	8BW7	16280	2025-06-05	2022-12-06	3.53	4.04	3.61	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.63	0.0	0.04	18.09	0.00	2.524	10.06	4.13	3.8	96.2	0.0	0.78	0.29	0.56	0.73	1.37	4748	612	3	0	2	0	0	logfile
✔	8FEL	29032	2025-06-08	2022-12-06	4.64	5.02	4.33	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.4	0.002	0.58	0.0	0.04	13.02	0.00	2.548	8.97	0.00	5.1	94.9	0.0	0.21	2.55	0.75	0.47	—	9201	1191	3	0	0	0	0	logfile

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