Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FEL	29032	2025-06-08	2022-12-06	4.64	5.02	4.33	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.4	0.002	0.58	0.0	0.04	13.02	0.00	2.548	8.97	0.00	5.1	94.9	0.0	0.21	2.55	0.75	0.47	—	9201	1191	3	0	0	0	0	logfile
✔	8BWC	16282	2025-06-19	2022-12-06	3.5	3.66	3.35	3.7	0.003	0.69	0.0	0.05	13.35	0.01	2.131	7.51	0.00	1.8	98.2	0.0	-0.72	0.69	0.81	2.82	3.7	0.002	0.52	0.0	0.04	14.86	0.00	2.317	2.04	0.91	3.2	96.8	0.0	0.17	0.94	0.66	0.83	2.52	22112	1442	5	0	0	0	10846	logfile
✘	8HMZ	34905	2025-06-10	2022-12-06	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11542	1367	9	82	6	0	0	logfile
✔	8HMY	34904	2025-06-10	2022-12-06	2.94	3.24	3.08	3.2	0.005	0.85	3.0	0.05	19.41	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.003	0.59	0.0	0.04	19.69	0.00	2.141	6.50	4.22	3.0	96.9	0.1	0.37	1.19	0.68	0.80	1.97	11675	1368	7	90	6	0	0	logfile
✔	8FEH	29027	2025-06-04	2022-12-06	3.28	4.31	3.35	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.003	0.63	0.0	0.04	15.04	0.00	2.546	8.98	1.38	4.9	95.1	0.0	-1.45	2.57	0.47	0.88	2.42	1993	268	1	0	0	0	0	logfile
✔	8FEX	29033	2025-06-06	2022-12-06	3.07	3.30	3.12	3.4	0.003	0.46	0.0	0.04	13.44	0.00	1.911	7.41	0.00	5.8	94.2	0.0	-0.93	0.60	0.73	2.45	3.4	0.003	0.54	0.0	0.04	15.68	0.00	2.476	6.93	2.13	5.5	94.5	0.0	-0.62	0.34	0.57	0.72	1.82	7302	891	2	0	0	0	0	logfile
✔	8FEJ	29029	2025-06-09	2022-12-06	4.64	5.33	4.67	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.5	0.002	0.57	0.0	0.04	12.67	0.00	2.563	6.79	0.00	6.4	93.4	0.2	-0.56	1.32	0.89	0.70	—	10464	1368	3	0	0	0	0	logfile
✔	8BW0	16279	2025-06-04	2022-12-06	3.11	3.43	3.06	3.4	0.005	0.80	0.0	0.05	19.99	0.01	2.189	10.70	0.00	5.1	94.9	0.0	0.61	0.75	0.72	1.84	3.4	0.003	0.85	0.0	0.05	14.98	0.01	2.374	11.33	3.24	5.9	94.1	0.0	0.12	0.51	0.78	0.77	2.08	3201	398	7	0	13	0	0	logfile
✔	8FEi	29028	2025-06-05	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.92	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.60	0.0	0.04	14.62	0.00	1.968	5.68	0.89	3.0	97.0	0.0	-0.04	0.47	0.91	0.86	2.93	5189	674	2	0	2	0	0	logfile
✘	8BVS	16270	2025-06-05	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✔	8BVQ	16268	2025-06-21	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.003	0.52	0.0	0.04	16.35	0.00	2.356	5.06	2.91	5.5	94.4	0.1	-0.69	0.87	0.57	0.79	1.84	23133	1518	6	0	0	0	11258	logfile
✔	8BVR	16269	2025-06-05	2022-12-05	3.52	4.00	3.59	3.9	0.005	0.72	0.0	0.04	17.01	0.01	2.178	12.22	0.19	4.6	95.4	0.0	0.64	0.62	0.78	1.14	3.9	0.003	0.71	0.0	0.04	17.14	0.00	2.524	11.28	4.85	3.6	96.4	0.0	1.26	0.29	0.61	0.79	1.15	4806	617	3	0	3	0	0	logfile
✔	8HMV	34903	2025-06-06	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.52	0.0	0.04	15.66	0.00	2.501	3.16	0.79	2.8	97.2	0.0	0.78	0.34	0.66	0.87	3.58	8127	1022	5	0	0	0	0	logfile
✔	8FE1	29019	2025-06-14	2022-12-05	3.0	3.54	2.91	3.3	0.016	1.05	0.0	0.09	17.02	0.01	2.217	4.85	0.06	1.4	98.6	0.0	0.44	0.73	0.85	3.73	3.3	0.004	0.84	1.0	0.04	14.48	0.00	2.404	6.71	1.44	1.2	98.8	0.0	1.49	1.27	0.73	0.87	3.56	15445	1772	12	0	48	0	0	logfile
✔	8HMP	34902	2025-06-07	2022-12-05	2.77	2.61	2.82	2.8	0.005	0.92	0.0	0.06	14.08	0.01	2.228	5.94	0.00	3.4	96.6	0.0	-0.73	0.63	0.79	3.64	2.7	0.003	0.68	0.0	0.04	16.74	0.00	2.431	8.86	2.65	3.8	96.2	0.0	0.28	0.43	0.62	0.82	3.49	8319	1045	6	0	1	0	0	logfile
✔	8FDU	29014	2025-06-12	2022-12-04	3.3	3.75	3.30	3.6	0.005	0.83	0.0	0.05	13.46	0.00	2.212	12.19	0.21	4.1	95.9	0.1	-0.29	0.66	0.78	1.76	3.6	0.003	0.66	0.0	0.04	15.64	0.00	2.482	7.79	2.32	3.9	96.1	0.0	0.53	1.23	0.67	0.80	1.69	13193	1633	4	0	2	0	0	logfile
✔	8FDT	29012	2025-06-23	2022-12-04	3.2	3.48	3.36	3.5	0.005	0.80	0.0	0.05	13.94	0.00	1.592	11.78	0.27	4.0	95.9	0.1	0.21	0.70	0.76	1.69	3.5	0.002	0.61	0.0	0.04	16.06	0.00	2.487	8.08	1.37	2.9	97.1	0.1	1.16	0.67	0.70	0.77	1.72	27096	3368	4	0	5	0	0	logfile
✔	8HMF	34898	2025-06-22	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	4.5	0.004	0.65	0.0	0.04	14.52	0.00	2.420	10.62	0.00	4.5	95.4	0.2	0.75	0.57	0.91	0.83	—	25330	3135	4	0	2	0	0	logfile
✔	8HME	34897	2025-06-19	2022-12-03	4.2	4.82	4.19	4.2	0.002	0.60	0.0	0.04	14.51	0.00	2.143	11.78	0.00	4.6	95.2	0.2	-0.01	0.87	0.81	—	4.2	0.002	0.61	0.0	0.04	14.79	0.00	2.384	8.95	0.00	4.7	95.1	0.1	0.20	0.53	0.88	0.82	—	22169	2745	4	0	2	0	0	logfile
✔	8HMD	34896	2025-06-23	2022-12-03	4.7	5.11	4.69	3.8	0.003	0.62	0.0	0.04	14.08	0.00	2.143	9.86	0.03	5.2	94.7	0.1	0.12	0.89	0.77	—	3.8	0.006	0.63	0.0	0.04	14.10	0.00	2.310	11.91	0.00	5.6	94.3	0.1	0.28	0.93	0.91	0.83	—	27372	3387	5	0	2	0	0	logfile

• ← previous
• Page 310 of 700
• next →