Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HMD	34896	2025-06-23	2022-12-03	4.7	5.11	4.69	3.8	0.003	0.62	0.0	0.04	14.08	0.00	2.143	9.86	0.03	5.2	94.7	0.1	0.12	0.89	0.77	—	3.8	0.006	0.63	0.0	0.04	14.10	0.00	2.310	11.91	0.00	5.6	94.3	0.1	0.28	0.93	0.91	0.83	—	27372	3387	5	0	2	0	0	logfile
✔	8HMF	34898	2025-06-22	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	4.5	0.004	0.65	0.0	0.04	14.52	0.00	2.420	10.62	0.00	4.5	95.4	0.2	0.75	0.57	0.91	0.83	—	25330	3135	4	0	2	0	0	logfile
✔	8HMA	34891	2025-06-16	2022-12-02	3.4	3.79	3.59	3.7	0.005	0.62	0.0	0.04	14.85	0.00	2.196	7.66	0.00	5.6	94.4	0.0	-0.67	0.62	0.78	2.23	3.7	0.003	0.67	0.0	0.04	16.02	0.00	2.300	7.92	2.17	4.7	95.3	0.0	-0.03	0.58	0.61	0.78	1.77	19101	2333	5	0	19	0	0	logfile
✔	8HLZ	34886	2025-06-21	2022-12-02	3.5	3.89	3.48	3.4	0.010	1.15	1.0	0.06	21.96	0.01	1.958	26.05	25.98	11.7	86.6	1.8	-4.60	0.61	0.42	0.73	3.5	0.007	0.98	1.0	0.05	17.64	0.01	2.318	16.95	4.00	8.3	91.2	0.5	-1.94	1.96	0.75	0.63	0.90	24718	3034	6	0	0	0	0	logfile
✔	8FD7	29004	2025-06-17	2022-12-02	3.1	3.01	—	3.2	0.005	0.58	0.0	0.11	12.34	0.00	2.223	7.54	2.76	6.1	93.7	0.1	-0.41	0.72	0.76	2.56	3.2	0.003	0.65	0.0	0.05	13.88	0.00	2.282	7.03	2.43	6.2	93.7	0.1	-0.09	0.45	0.76	0.84	2.25	19701	2416	6	0	20	3	0	logfile
✔	8HM0	34887	2025-06-10	2022-12-02	3.1	3.43	3.00	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.65	0.0	0.04	16.96	0.00	2.509	8.26	3.59	6.5	93.5	0.0	-1.31	0.46	0.76	0.81	1.89	11331	1474	3	0	0	0	0	logfile
✘	8FD6	29003	2025-06-19	2022-12-02	2.9	3.18	2.95	3.2	0.007	0.74	0.0	0.05	14.43	0.00	1.835	8.75	0.16	3.8	96.2	0.0	0.39	0.64	0.73	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22170	2747	2	0	6	0	0	logfile
✔	8FD3	29001	2025-06-23	2022-12-01	3.12	3.37	3.23	3.2	0.003	0.57	0.0	0.04	18.48	0.00	2.137	10.11	2.76	5.4	94.3	0.3	0.44	0.77	0.68	1.53	3.2	0.009	0.79	0.0	0.05	18.97	0.01	2.444	11.14	2.53	6.3	93.4	0.3	-0.29	1.69	0.85	0.82	2.69	26250	2979	15	85	0	0	0	logfile
✔	8FCY	28999	2025-06-20	2022-12-01	3.4	3.72	3.53	3.7	0.003	0.59	0.0	0.04	14.75	0.00	2.224	7.84	0.12	4.5	95.5	0.0	0.50	0.75	0.81	1.99	3.7	0.003	0.59	0.0	0.04	16.27	0.00	2.470	7.43	1.45	4.8	95.2	0.0	0.71	0.49	0.78	0.86	1.81	23142	2864	2	0	4	0	0	logfile
✘	8FCN	28987	2025-06-29	2022-12-01	2.95	3.93	4.11	3.5	0.010	0.82	0.0	0.06	12.73	0.00	2.403	0.65	0.11	1.2	98.7	0.1	0.17	0.76	0.64	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35034	4446	18	0	12	0	0	logfile
✔	8FCV	28994	2025-06-20	2022-12-01	2.95	4.02	3.25	3.6	0.003	0.62	0.0	0.04	19.30	0.00	1.983	14.48	0.73	4.1	95.4	0.4	0.45	0.85	0.77	1.77	3.6	0.003	0.66	0.0	0.04	19.12	0.00	1.898	10.19	2.18	3.6	96.1	0.3	1.03	1.60	0.87	0.83	1.69	23116	2695	17	60	14	0	0	logfile
✔	8FCX	28998	2025-06-12	2022-12-01	3.04	4.27	3.25	3.6	0.003	0.60	0.0	0.04	17.79	0.00	1.984	13.10	0.61	3.9	95.4	0.7	0.34	0.85	0.79	0.79	3.6	0.005	0.67	0.0	0.04	17.69	0.00	1.822	13.53	1.69	3.9	95.7	0.4	1.27	2.52	0.87	0.84	1.03	13940	1715	10	0	10	0	0	logfile
✔	8FCW	28997	2025-06-13	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.006	1.09	2.0	0.04	20.01	0.01	1.851	11.22	2.03	2.6	96.8	0.6	1.35	1.32	0.87	0.85	1.56	15170	1715	12	60	10	0	0	logfile
✔	8FD2	29000	2025-06-22	2022-12-01	3.65	4.42	3.76	3.9	0.003	0.57	0.0	0.04	17.94	0.00	2.136	9.87	2.84	5.4	94.3	0.3	0.44	0.76	0.58	0.67	3.9	0.003	0.84	0.0	0.05	18.94	0.01	2.350	19.18	3.18	5.2	94.6	0.2	-0.74	1.17	0.82	0.73	0.95	25797	2979	13	63	0	0	0	logfile
✔	8FCT	28992	2025-06-29	2022-12-01	3.42	4.38	3.66	3.9	0.011	0.81	0.0	0.06	12.05	0.00	2.429	0.62	0.05	1.3	98.5	0.1	0.46	0.71	0.53	0.99	3.9	0.003	0.75	0.0	0.05	14.37	0.00	2.320	9.18	0.79	1.9	98.1	0.0	1.97	4.29	0.88	0.85	0.79	34329	4356	13	0	12	0	0	logfile
✔	8BUZ	16252	2025-06-09	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.4	0.003	0.61	0.0	0.04	17.57	0.00	1.933	10.42	3.51	4.9	95.1	0.0	0.97	1.40	0.73	0.77	1.15	9921	1223	4	0	3	0	0	logfile
✔	8FCJ	28980	2025-06-23	2022-12-01	2.83	3.46	2.92	3.2	0.003	0.56	0.0	0.04	19.33	0.00	2.120	9.78	2.91	5.5	94.2	0.3	0.58	0.82	0.86	3.35	3.2	0.003	0.59	0.0	0.04	19.39	0.00	2.403	6.96	1.70	5.3	94.4	0.3	0.61	1.10	0.83	0.86	3.15	26820	2979	15	113	0	0	0	logfile
✔	8HLP	34880	2025-06-16	2022-11-30	3.5	3.86	3.63	3.8	0.005	0.63	0.0	0.04	14.18	0.01	1.964	10.27	0.00	8.6	91.4	0.0	-0.88	0.63	0.79	2.14	3.8	0.003	0.67	0.0	0.04	16.00	0.00	2.325	8.36	1.69	5.5	94.5	0.0	-0.19	0.45	0.62	0.79	1.53	19067	2332	5	0	18	0	0	logfile
✔	8HLA	34859	2025-06-18	2022-11-29	2.81	2.68	2.73	2.9	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	2.9	0.003	0.67	0.0	0.05	17.28	0.00	2.407	12.72	2.84	5.4	94.5	0.1	-0.57	0.94	0.62	0.84	3.24	20868	2580	20	0	12	0	0	logfile
✔	8FAZ	28961	2025-06-06	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.0	0.004	0.69	0.0	0.04	15.39	0.00	1.940	12.88	1.74	2.9	97.1	0.0	0.46	2.04	0.83	0.82	2.56	7331	926	7	0	5	0	0	logfile

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