Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FAZ	28961	2025-06-06	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.0	0.004	0.69	0.0	0.04	15.39	0.00	1.940	12.88	1.74	2.9	97.1	0.0	0.46	2.04	0.83	0.82	2.56	7331	926	7	0	5	0	0	logfile
✔	8FAK	28959	2025-06-13	2022-11-28	3.22	3.32	3.44	3.4	0.002	0.46	0.0	0.04	19.10	0.00	1.988	8.55	0.00	2.3	97.7	0.0	1.43	0.69	0.74	2.43	3.4	0.003	0.55	0.0	0.04	19.97	0.00	2.231	3.94	0.57	3.6	96.4	0.0	0.32	1.23	0.69	0.77	2.74	14963	837	7	57	2	0	7248	logfile
✔	8BTG	16229	2025-06-17	2022-11-28	3.2	4.18	3.29	3.3	0.007	0.71	0.0	0.05	18.07	0.00	1.067	17.56	0.05	2.9	97.1	0.0	1.09	0.73	0.58	2.18	3.3	0.003	0.56	0.0	0.04	18.68	0.00	1.846	9.59	1.22	2.5	97.5	0.0	2.20	0.49	0.89	0.83	2.21	20330	2339	16	65	14	0	0	logfile
✔	8HKK	34853	2025-06-24	2022-11-27	2.84	2.16	2.95	1.8	0.012	1.19	8.0	0.05	16.14	0.01	1.710	12.44	0.92	2.1	97.8	0.1	-0.41	0.79	0.82	3.56	1.8	0.003	0.65	0.0	0.04	16.89	0.00	2.499	6.02	2.51	2.5	97.4	0.1	1.07	0.53	0.80	0.83	3.70	28687	3596	8	0	23	0	0	logfile
✔	8HKM	34855	2025-06-25	2022-11-27	2.95	2.42	3.07	1.9	0.007	0.80	3.0	0.05	16.01	0.01	1.484	10.49	1.30	2.6	97.3	0.1	-0.56	0.80	0.84	3.13	1.9	0.003	0.62	0.0	0.04	16.35	0.00	2.452	6.43	2.12	2.2	97.7	0.1	1.10	1.55	0.79	0.83	2.84	28855	3596	8	0	19	0	0	logfile
✔	8HKQ	34858	2025-06-24	2022-11-27	2.9	2.37	3.12	2.1	0.008	0.76	1.0	0.04	16.07	0.00	1.532	8.96	0.19	2.6	97.4	0.0	0.14	0.73	0.66	0.58	1.9	0.003	0.72	0.0	0.04	16.86	0.00	2.474	8.12	2.23	2.6	97.4	0.0	0.87	0.96	0.81	0.82	2.81	28676	3608	8	0	20	0	0	logfile
✔	8HKP	34856	2025-06-29	2022-11-27	3.6	3.48	3.48	3.5	0.009	0.68	0.0	0.04	23.50	0.00	2.142	4.27	0.00	2.7	97.3	0.0	-2.19	0.64	0.87	3.27	3.5	0.003	0.55	0.0	0.04	17.35	0.00	2.402	2.97	0.53	2.3	97.7	0.0	2.59	0.54	0.63	0.88	2.69	34098	2088	18	0	6	0	16842	logfile
✔	8FAi	28957	2025-06-06	2022-11-27	3.0	2.58	3.06	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.003	0.64	0.0	0.04	15.78	0.00	2.231	5.24	7.08	0.0	100.0	0.0	3.88	2.69	0.54	0.83	1.73	7845	1020	25	0	15	0	0	logfile
✔	8HKC	34849	2025-06-22	2022-11-25	2.49	2.34	2.50	2.3	0.002	0.46	0.0	0.04	17.03	0.00	2.123	4.80	0.00	1.5	98.5	0.0	0.81	0.77	0.86	3.35	2.3	0.005	0.64	0.0	0.04	18.81	0.00	1.940	5.12	1.50	2.9	97.1	0.0	0.49	0.35	0.77	0.89	3.56	25779	3067	8	83	3	0	0	logfile
✔	8HK6	34847	2025-06-24	2022-11-25	2.64	2.08	2.79	1.7	0.006	0.80	0.0	0.05	16.47	0.01	1.477	13.25	1.62	2.8	97.0	0.2	-0.80	0.79	0.82	3.37	1.7	0.003	0.60	0.0	0.04	17.40	0.00	2.498	7.53	3.11	2.7	97.1	0.2	0.79	0.45	0.79	0.82	2.96	28704	3596	8	0	24	0	0	logfile
✔	8HKF	34851	2025-06-24	2022-11-25	2.66	2.09	2.77	1.7	0.009	0.97	7.0	0.05	16.15	0.01	1.494	14.33	0.60	2.6	97.3	0.1	-0.44	0.79	0.82	3.80	1.7	0.003	0.66	0.0	0.04	16.86	0.01	2.458	7.01	2.13	2.7	97.2	0.1	0.99	1.54	0.80	0.83	3.45	28700	3596	8	0	20	0	0	logfile
✔	8HK7	34848	2025-06-14	2022-11-25	3.0	3.70	3.50	3.9	0.009	0.83	0.0	0.04	16.92	0.00	1.579	11.81	0.53	8.6	91.2	0.2	-0.87	0.43	0.39	0.28	3.6	0.004	0.95	0.0	0.05	19.09	0.00	2.276	11.36	1.65	7.4	92.6	0.0	-0.63	2.50	0.60	0.76	1.53	15765	1872	8	0	17	0	0	logfile
✔	8HKE	34850	2025-06-10	2022-11-25	3.71	4.00	3.77	3.9	0.008	0.83	4.0	0.06	17.03	0.00	2.049	16.52	0.09	9.1	90.9	0.0	-5.00	0.65	0.80	2.65	3.9	0.003	0.63	0.0	0.04	17.57	0.00	2.027	9.59	3.03	4.4	95.6	0.0	-0.94	0.59	0.64	0.79	1.64	11854	1306	6	74	2	0	0	logfile
✔	8FA2	28948	2025-06-04	2022-11-25	2.82	2.48	3.14	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.43	0.0	0.03	14.47	0.00	2.634	5.98	0.67	0.0	100.0	0.0	5.80	0.34	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	8FA1	28947	2025-06-04	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.004	0.52	0.0	0.04	15.84	0.00	2.408	6.98	2.02	0.3	99.7	0.0	4.75	1.17	0.77	0.79	1.57	2553	339	6	0	0	0	0	logfile
✔	8HJW	34840	2025-06-16	2022-11-24	4.1	4.34	4.18	4.2	0.003	0.70	0.0	0.04	13.47	0.00	2.134	13.05	0.47	2.2	97.5	0.3	0.71	0.80	0.70	—	4.2	0.005	0.76	0.0	0.04	13.48	0.01	2.377	13.67	0.05	4.2	95.8	0.0	0.36	1.24	0.83	0.77	—	18516	2430	2	0	0	0	0	logfile
✔	8HK3	34843	2025-06-07	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.2	0.003	0.57	0.0	0.04	13.63	0.00	2.517	4.90	2.24	3.4	96.6	0.0	0.82	1.21	0.77	0.79	3.14	8746	1135	5	0	0	0	0	logfile
✔	8HK5	34846	2025-06-06	2022-11-24	3.0	2.26	2.93	2.1	0.003	0.63	0.0	0.04	11.85	0.00	2.073	2.69	0.24	0.8	99.2	0.0	-0.35	0.74	0.74	2.80	2.0	0.004	0.65	0.0	0.04	15.74	0.00	2.457	8.19	3.05	2.1	97.9	0.0	1.09	0.55	0.77	0.80	2.88	7604	967	6	0	2	0	0	logfile
✔	8HK1	34841	2025-06-26	2022-11-24	2.7	2.81	2.74	2.9	0.005	0.83	3.0	0.05	18.69	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	2.8	0.004	0.75	1.0	0.04	18.15	0.00	2.264	6.36	3.36	3.9	96.1	0.0	0.48	0.66	0.66	0.80	2.52	30236	4205	24	148	5	0	0	logfile
✔	8HK2	34842	2025-06-08	2022-11-24	2.9	2.57	2.93	3.1	0.008	1.12	2.0	0.08	9.70	0.01	2.114	6.33	0.79	2.5	97.1	0.3	0.47	0.78	0.81	3.37	3.2	0.003	0.64	0.0	0.04	14.36	0.00	2.526	7.64	2.18	1.9	98.1	0.0	1.31	2.55	0.78	0.85	3.30	9548	1212	7	0	7	0	0	logfile

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