Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HJV	34839	2025-06-20	2022-11-23	3.1	2.67	3.34	3.2	0.023	2.02	2.0	0.52	20.90	0.04	1.901	19.96	0.99	5.7	94.3	0.0	-0.85	0.60	0.79	1.73	3.1	0.006	0.80	0.0	0.04	18.54	0.00	2.089	6.81	1.62	4.7	95.3	0.0	2.50	0.74	0.62	0.83	1.68	22193	2265	68	0	67	0	0	logfile
✔	8F9G	28942	2025-06-13	2022-11-23	3.2	3.47	3.26	3.6	0.006	1.09	0.0	0.07	12.57	0.01	2.197	0.76	0.14	1.7	98.3	0.0	1.14	0.62	0.74	3.18	3.5	0.003	0.67	0.0	0.04	13.27	0.00	2.144	5.32	1.57	2.8	97.2	0.0	0.66	1.35	0.68	0.83	2.98	15154	1648	27	0	299	0	0	logfile
✔	8HJU	34838	2025-06-22	2022-11-23	2.8	2.56	2.77	2.8	0.029	2.08	1.0	0.40	20.78	0.03	1.827	25.04	0.66	3.6	96.3	0.0	-0.29	0.65	0.84	3.31	2.7	0.009	0.87	0.0	0.04	18.64	0.01	1.902	11.70	2.03	4.2	95.8	0.0	1.93	1.19	0.66	0.86	3.43	23917	2330	71	0	97	0	0	logfile
✔	8BRD	16212	2025-06-08	2022-11-23	2.48	2.70	2.49	2.8	0.005	0.83	2.0	0.06	16.18	0.02	1.733	13.70	2.88	2.4	97.6	0.0	2.09	0.57	0.78	2.12	2.8	0.003	0.57	0.0	0.04	17.11	0.00	2.132	8.68	3.17	2.1	97.9	0.0	2.89	0.96	0.61	0.81	1.92	9929	1312	13	0	2	12	0	logfile
✔	8BRi	16215	2025-06-08	2022-11-23	3.9	4.18	3.95	4.1	0.005	1.30	2.0	0.07	16.37	0.01	1.969	24.91	1.15	2.8	97.2	0.0	2.08	0.70	0.79	1.45	4.1	0.004	0.99	0.0	0.05	17.38	0.00	2.444	17.71	4.03	2.2	97.8	0.0	1.18	0.57	0.71	0.80	0.96	9911	1312	7	0	0	0	0	logfile
✔	8F9M	28945	2025-06-18	2022-11-23	4.1	4.26	4.04	4.0	0.006	0.97	0.0	0.06	11.61	0.01	2.185	1.99	0.20	1.9	98.1	0.0	0.76	0.72	0.75	—	4.0	0.004	0.73	0.0	0.04	12.11	0.00	2.293	13.43	0.10	4.2	95.8	0.0	-0.13	1.74	0.74	0.79	—	20313	2344	29	0	287	0	0	logfile
✔	8F92	28941	2025-06-21	2022-11-23	3.14	3.37	3.14	3.3	0.006	1.03	0.0	0.06	12.26	0.01	2.245	0.84	0.00	3.3	96.7	0.0	0.35	0.76	0.83	3.69	3.3	0.003	0.68	0.0	0.04	14.31	0.00	2.118	6.00	2.42	4.1	95.8	0.1	-0.09	0.67	0.79	0.87	3.30	24882	3063	33	0	81	0	0	logfile
✘	8BRJ	16217	2025-06-14	2022-11-23	4.08	4.17	4.07	4.0	0.003	0.64	0.0	0.04	13.33	0.00	2.086	18.92	0.17	6.9	92.7	0.4	-0.95	0.72	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11627	1582	3	0	0	0	0	logfile
✔	8HJ2	33481	2025-06-06	2022-11-22	3.8	3.53	3.77	3.5	0.007	1.21	0.0	0.07	13.41	0.01	2.242	5.80	0.00	4.9	95.1	0.0	-2.19	0.59	0.75	1.57	3.5	0.004	0.73	0.0	0.05	15.94	0.00	2.492	10.97	3.62	4.6	95.4	0.0	0.37	0.50	0.58	0.75	1.00	7467	1027	5	0	0	0	0	logfile
✔	8HJ3	34831	2025-06-04	2022-11-22	3.29	3.43	3.20	3.3	0.005	0.80	0.0	0.05	14.80	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.69	0.0	0.05	15.66	0.00	2.507	13.87	2.12	4.1	95.9	0.0	0.93	1.46	0.46	0.78	1.99	3274	416	2	0	1	0	0	logfile
✔	8HJ5	34833	2025-06-08	2022-11-22	3.0	3.45	3.17	3.4	0.004	0.69	0.0	0.04	14.85	0.00	2.244	8.22	0.19	5.4	94.6	0.0	-0.98	0.54	0.81	3.03	3.4	0.003	0.62	0.0	0.04	15.61	0.00	2.446	4.94	1.98	5.0	95.0	0.0	0.07	0.30	0.56	0.82	2.58	9678	1232	7	0	1	0	0	logfile
✔	8F8P	28932	2025-06-13	2022-11-22	2.26	2.19	2.30	1.9	0.004	0.83	0.0	0.05	17.73	0.01	2.301	2.96	2.04	2.7	97.3	0.0	-1.31	0.72	0.85	2.89	1.8	0.003	0.61	0.0	0.05	17.19	0.00	2.007	4.61	2.30	3.0	97.0	0.0	0.85	1.16	0.73	0.87	3.28	14640	1855	10	0	10	0	0	logfile
✔	8F8R	28934	2025-06-18	2022-11-22	3.3	4.00	3.48	3.7	0.005	0.96	0.0	0.05	15.05	0.01	2.042	3.66	0.00	2.5	97.5	0.0	-1.91	0.83	0.87	2.13	3.7	0.003	0.60	0.0	0.04	14.60	0.00	1.984	5.03	0.41	3.3	96.7	0.0	1.30	1.15	0.84	0.88	2.00	20526	2601	14	0	14	0	0	logfile
✔	8F8S	28935	2025-06-18	2022-11-22	2.84	2.18	2.89	1.9	0.004	0.61	0.0	0.05	14.04	0.00	2.002	4.56	2.94	3.2	96.8	0.0	-0.35	0.80	0.84	3.68	1.9	0.005	0.98	2.0	0.05	17.01	0.00	1.980	7.83	3.63	3.3	96.7	0.0	0.57	0.35	0.79	0.84	3.06	20371	2579	14	0	14	0	0	logfile
✔	8BR2	16197	2025-06-14	2022-11-22	2.9	2.85	2.83	2.9	0.008	0.56	0.0	0.04	18.03	0.02	2.117	11.68	0.80	3.0	97.0	0.0	-2.85	0.62	0.85	3.35	2.9	0.003	0.54	0.0	0.04	19.09	0.00	2.230	5.53	1.59	1.6	98.4	0.0	0.46	1.48	0.58	0.86	2.90	15574	1866	21	40	18	120	0	logfile
✔	8HJ0	33482	2025-06-06	2022-11-22	3.12	2.73	3.10	2.8	0.006	1.07	0.0	0.06	14.89	0.01	2.254	6.47	0.00	4.6	95.4	0.0	-1.89	0.52	0.66	2.34	2.8	0.003	0.63	0.0	0.04	16.58	0.00	2.520	9.77	3.32	4.1	95.9	0.0	0.20	0.44	0.52	0.68	2.02	8260	1043	5	0	0	0	0	logfile
✔	8F8T	28936	2025-06-19	2022-11-22	3.26	3.87	3.39	3.6	0.005	0.93	0.0	0.06	15.12	0.01	2.105	2.47	3.58	3.7	96.3	0.0	-0.20	0.83	0.85	2.65	3.6	0.003	0.63	0.0	0.04	14.70	0.00	1.970	4.86	1.16	3.2	96.8	0.0	1.32	2.49	0.84	0.88	1.73	22393	2833	15	0	14	0	0	logfile
✔	8F8Q	28933	2025-06-19	2022-11-22	2.79	2.16	2.84	1.8	0.004	0.69	0.0	0.05	14.38	0.01	2.072	3.55	3.93	3.1	96.9	0.0	-0.96	0.80	0.83	3.55	1.8	0.004	0.67	0.0	0.05	16.96	0.00	1.977	6.21	3.46	4.2	95.8	0.0	0.52	0.35	0.80	0.84	3.19	22006	2778	14	0	12	0	0	logfile
✔	8HJ4	34832	2025-06-10	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	18.93	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.004	0.63	0.0	0.04	19.65	0.00	2.494	10.72	1.98	6.8	93.2	0.0	-0.70	0.46	0.80	0.77	1.81	11652	1163	3	113	0	0	0	logfile
✔	8HiX	33480	2025-06-06	2022-11-22	3.12	2.87	3.08	3.0	0.006	0.95	0.0	0.06	15.23	0.01	2.178	6.64	0.00	4.1	95.9	0.0	-1.52	0.55	0.70	2.46	3.0	0.003	0.56	0.0	0.04	17.09	0.00	2.438	9.32	1.99	3.1	96.9	0.0	0.61	0.38	0.54	0.72	1.77	8274	1043	5	0	0	0	0	logfile

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