Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Hi4	34812	2025-06-15	2022-11-18	3.35	3.51	3.32	3.5	0.006	0.87	0.0	0.06	15.95	0.00	2.231	9.91	0.35	8.1	91.9	0.0	-2.10	0.65	0.63	0.65	3.6	0.003	0.67	0.0	0.04	17.19	0.00	2.421	9.12	4.59	6.5	93.5	0.0	-1.36	0.54	0.69	0.70	1.05	17432	2368	2	0	0	0	0	logfile
✔	8Hi1	34809	2025-06-18	2022-11-18	3.09	3.43	3.24	3.4	0.005	0.69	0.0	0.04	17.86	0.00	1.947	11.15	0.00	9.4	90.6	0.0	-6.18	0.58	0.73	2.49	3.4	0.004	0.90	0.0	0.04	19.04	0.00	2.222	7.26	1.44	6.5	93.5	0.0	-2.56	1.13	0.58	0.77	2.07	20998	1234	8	57	0	0	10143	logfile
✔	8F76	28896	2025-06-06	2022-11-18	3.1	3.33	3.05	3.3	0.005	0.85	0.0	0.05	14.68	0.01	2.245	6.25	0.00	3.2	96.8	0.0	-1.19	0.68	0.83	3.50	3.4	0.004	0.56	0.0	0.04	16.12	0.00	2.541	7.05	3.04	3.2	96.8	0.0	0.56	0.38	0.65	0.86	3.06	8170	1038	6	0	1	0	0	logfile
✔	8F7E	28904	2025-06-05	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.005	0.92	0.0	0.05	14.29	0.01	2.518	23.27	0.00	8.5	91.5	0.0	-2.99	2.06	0.60	0.63	—	6642	814	2	0	0	0	0	logfile
✔	8BQ2	16170	2025-06-19	2022-11-18	3.8	3.92	3.66	3.8	0.003	0.54	0.0	0.04	15.17	0.01	2.219	7.91	0.00	2.0	98.0	0.0	-0.37	0.77	0.86	2.55	3.8	0.002	0.49	0.0	0.04	14.96	0.00	2.209	4.96	0.72	1.0	99.0	0.0	0.71	0.63	0.78	0.88	2.24	22331	2790	19	30	27	0	0	logfile
✔	8F7C	28902	2025-06-14	2022-11-18	3.92	4.16	3.92	4.2	0.003	0.52	0.0	0.04	13.95	0.00	2.239	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	4.1	0.003	0.61	0.0	0.04	16.13	0.00	2.553	3.10	1.97	2.9	97.1	0.0	1.33	1.33	0.66	0.83	1.57	15925	2009	7	0	0	0	0	logfile
✔	8F7J	28905	2025-06-04	2022-11-18	4.32	4.45	4.61	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.003	0.72	0.0	0.04	13.80	0.00	2.201	16.44	0.26	5.7	94.3	0.0	-3.44	2.26	0.44	0.42	—	3321	407	1	0	0	0	0	logfile
✔	8F74	28894	2025-06-14	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	17.29	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.53	0.0	0.04	16.34	0.00	2.476	7.16	2.86	3.1	96.9	0.0	1.89	0.42	0.62	0.81	1.55	16008	1881	18	0	15	6	0	logfile
✔	8F7A	28899	2025-06-10	2022-11-18	3.78	4.00	3.82	3.9	0.005	0.69	0.0	0.04	15.31	0.00	1.085	12.19	11.80	5.9	93.9	0.1	-2.21	0.69	0.72	0.70	3.9	0.004	0.83	0.0	0.05	16.42	0.00	1.899	12.71	3.12	4.5	95.5	0.0	0.12	1.13	0.74	0.83	1.48	6742	852	3	0	2	0	0	logfile
✔	8F75	28895	2025-06-08	2022-11-18	4.0	4.26	4.22	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.004	0.86	0.0	0.05	17.31	0.01	2.502	25.98	3.51	6.8	93.2	0.0	-2.88	2.66	0.72	0.73	—	9899	1218	3	0	0	0	0	logfile
✔	8F7B	28901	2025-06-14	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	18.68	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.003	0.51	0.0	0.04	16.38	0.00	2.422	6.59	2.16	2.4	97.6	0.0	2.19	1.12	0.60	0.80	2.11	16166	1894	18	0	17	6	0	logfile
✔	8F77	28897	2025-06-22	2022-11-18	3.15	3.43	3.19	3.4	0.005	0.75	0.0	0.04	16.49	0.01	2.206	8.39	0.28	3.8	96.2	0.0	-0.68	0.63	0.74	1.49	3.4	0.003	0.64	0.0	0.04	16.87	0.00	2.457	10.67	2.73	3.5	96.5	0.0	0.11	0.81	0.66	0.82	1.48	25678	3072	18	0	15	6	0	logfile
✔	8F79	28898	2025-06-28	2022-11-18	3.15	3.44	3.20	3.4	0.005	0.89	0.0	0.05	17.08	0.01	2.263	11.61	0.39	4.7	95.3	0.0	-1.17	0.61	0.69	1.33	3.3	0.005	0.66	0.0	0.04	16.64	0.00	2.508	13.07	2.27	4.1	95.9	0.0	-0.56	1.64	0.67	0.81	1.37	32333	3882	18	0	17	6	0	logfile
✔	8F7D	28903	2025-06-05	2022-11-18	4.2	4.28	4.23	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	4.2	0.003	0.81	0.0	0.05	13.49	0.01	2.463	21.75	0.13	6.1	93.9	0.0	-3.04	2.85	0.65	0.67	—	6578	811	2	0	0	0	0	logfile
✔	8F6Z	28893	2025-06-15	2022-11-17	2.7	3.51	2.66	3.1	0.007	0.81	0.0	0.05	15.71	0.00	1.907	8.80	0.00	3.0	97.0	0.0	0.31	0.82	0.87	4.21	3.2	0.003	0.54	0.0	0.04	14.06	0.00	2.426	6.04	1.13	2.4	97.6	0.0	1.40	1.14	0.77	0.85	3.90	16997	2015	19	0	37	5	0	logfile
✔	8F6Q	28888	2025-06-10	2022-11-17	3.6	3.83	3.71	3.9	0.006	0.72	0.0	0.04	12.98	0.00	2.109	20.44	0.00	2.3	97.7	0.0	0.52	0.75	0.82	0.69	3.9	0.003	0.58	0.0	0.03	16.84	0.00	2.624	10.98	2.11	2.0	98.0	0.0	4.13	0.69	0.73	0.80	1.36	12352	1592	8	0	0	0	0	logfile
✔	8F6X	28891	2025-06-19	2022-11-17	3.25	4.36	3.29	3.8	0.002	0.53	0.0	0.04	13.80	0.00	2.181	8.90	0.06	5.7	94.3	0.1	-0.91	0.84	0.73	2.65	3.8	0.005	0.62	0.0	0.04	14.71	0.00	2.502	9.27	1.03	5.9	94.0	0.1	-0.13	0.94	0.92	0.88	2.70	14952	1980	9	0	3	0	0	logfile
✔	8F6Y	28892	2025-06-15	2022-11-17	2.79	3.79	2.77	3.3	0.007	0.77	0.0	0.05	15.56	0.00	2.076	5.34	0.00	2.7	97.3	0.0	0.98	0.82	0.90	4.19	3.4	0.002	0.51	0.0	0.04	13.74	0.00	2.470	3.97	0.37	1.5	98.5	0.0	2.16	0.44	0.77	0.83	3.80	17053	2022	18	0	36	5	0	logfile
✔	8BPR	16164	2025-06-09	2022-11-17	3.65	4.06	3.86	3.9	0.004	0.95	0.0	0.04	17.51	0.00	2.072	3.39	0.66	3.0	97.0	0.0	0.86	0.78	0.76	1.72	3.9	0.004	0.63	0.0	0.04	18.49	0.00	1.920	5.03	2.32	3.8	96.2	0.0	2.22	3.63	0.80	0.81	1.40	10055	1401	14	44	7	0	0	logfile
✔	8HHY	34807	2025-06-23	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.73	0.0	0.05	14.26	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.004	0.72	0.0	0.05	15.76	0.00	2.390	13.27	2.42	5.4	94.6	0.0	-1.70	0.40	0.61	0.65	1.64	27420	3483	16	0	32	0	0	logfile

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