Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHX	34806	2025-06-23	2022-11-17	3.62	3.70	3.71	3.6	0.004	0.66	0.0	0.05	13.43	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.003	0.67	1.0	0.05	14.76	0.00	2.204	11.11	1.76	4.9	95.1	0.0	-1.21	0.41	0.46	0.60	0.87	27435	3477	17	0	35	0	0	logfile
✔	8F6R	28889	2025-06-09	2022-11-17	4.0	4.17	3.83	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	4.1	0.004	0.75	0.0	0.04	16.37	0.00	2.419	12.73	1.90	1.5	98.5	0.0	2.90	1.34	0.77	0.81	—	10290	1314	6	0	0	0	0	logfile
✔	8F6Q	28888	2025-06-10	2022-11-17	3.6	3.83	3.71	3.9	0.006	0.72	0.0	0.04	12.98	0.00	2.109	20.44	0.00	2.3	97.7	0.0	0.52	0.75	0.82	0.69	3.9	0.003	0.58	0.0	0.03	16.84	0.00	2.624	10.98	2.11	2.0	98.0	0.0	4.13	0.69	0.73	0.80	1.36	12352	1592	8	0	0	0	0	logfile
✔	8HH7	34754	2025-06-21	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.003	0.51	0.0	0.04	14.54	0.00	1.996	3.02	0.70	2.2	97.8	0.0	1.73	0.91	0.84	0.93	3.82	24250	3129	13	0	12	0	0	logfile
✔	8HHB	34758	2025-06-21	2022-11-16	3.5	3.08	3.38	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.004	0.59	0.0	0.05	15.64	0.00	1.827	4.58	1.52	3.8	96.2	0.0	0.81	0.92	0.78	0.87	2.84	24245	3129	12	0	11	0	0	logfile
✔	8HH3	34750	2025-06-21	2022-11-16	4.3	3.10	3.05	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.003	0.55	0.0	0.04	14.49	0.00	1.941	4.62	0.04	2.0	97.9	0.1	1.06	0.36	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile
✔	8BPG	16152	2025-06-07	2022-11-16	3.1	3.80	3.04	3.3	0.010	1.12	0.0	0.08	12.89	0.01	2.028	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.72	0.0	0.04	14.91	0.00	2.484	7.44	3.47	5.5	94.5	0.0	-0.52	0.96	0.88	0.85	2.44	8650	1106	10	0	6	0	0	logfile
✔	8F6H	28883	2025-06-18	2022-11-16	3.9	4.17	3.96	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.004	0.84	0.0	0.04	15.26	0.00	1.786	7.17	1.40	7.7	92.0	0.2	-0.07	0.47	0.72	0.79	2.35	20768	1358	8	0	6	0	10347	logfile
✔	8F6F	28882	2025-06-09	2022-11-16	3.6	3.88	3.62	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.003	0.68	0.0	0.04	15.54	0.00	1.946	6.89	2.12	5.3	94.6	0.1	-0.20	1.18	0.72	0.81	2.56	10344	1344	8	0	6	0	0	logfile
✔	8BPF	16151	2025-06-16	2022-11-16	3.5	4.03	3.35	3.4	0.007	0.90	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.004	0.88	1.0	0.05	15.34	0.00	1.795	11.36	2.70	8.6	91.3	0.1	-1.30	1.74	0.89	0.80	2.01	18593	2370	23	0	12	0	0	logfile
✔	8BPA	16147	2025-06-09	2022-11-16	3.7	2.50	3.79	1.6	0.005	0.86	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	18.98	0.00	2.061	11.66	3.62	3.3	96.7	0.0	0.44	1.20	0.69	0.66	0.83	10393	1280	6	0	7	0	0	logfile
✔	8F6J	28885	2025-06-09	2022-11-16	3.7	3.93	3.63	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.66	0.0	0.04	16.24	0.00	2.096	7.71	2.53	6.3	93.4	0.4	-0.48	0.45	0.72	0.77	1.86	10472	1366	8	0	8	0	0	logfile
✔	8BPC	16149	2025-06-07	2022-11-16	2.8	3.02	2.95	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.54	0.0	0.04	18.08	0.00	1.959	6.56	3.07	2.7	97.3	0.0	1.44	1.64	0.71	0.80	2.69	8433	1030	7	0	6	44	0	logfile
✔	8F6P	28887	2025-06-16	2022-11-16	3.2	3.45	3.25	3.5	0.010	1.34	0.0	0.05	19.79	0.00	2.073	8.63	0.12	3.6	96.4	0.0	1.91	0.56	0.77	2.70	3.5	0.003	0.50	0.0	0.03	14.59	0.00	2.401	9.70	1.41	3.3	96.7	0.0	2.29	0.33	0.56	0.80	2.35	17507	1091	4	0	34	0	8229	logfile
✔	8F6i	28884	2025-06-09	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.006	0.63	0.0	0.04	13.80	0.00	2.006	9.14	0.09	5.6	94.4	0.0	0.24	0.47	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	8HH1	34748	2025-06-21	2022-11-16	2.9	3.08	2.85	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.006	0.60	0.0	0.05	16.01	0.00	1.834	3.61	1.25	2.3	97.7	0.0	1.00	0.43	0.82	0.93	3.48	24280	3129	13	0	12	0	0	logfile
✔	8HHA	34757	2025-06-21	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	14.06	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.54	0.0	0.04	15.43	0.00	1.907	5.19	1.44	3.1	96.9	0.0	1.04	0.30	0.79	0.88	2.65	24245	3129	12	0	11	0	0	logfile
✔	8HHM	34804	2025-06-05	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.85	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.3	0.005	0.63	0.0	0.04	21.37	0.00	2.035	6.97	2.63	2.9	97.1	0.0	1.66	1.78	0.82	0.83	2.26	5558	516	7	72	2	0	0	logfile
✔	8HHL	34803	2025-06-06	2022-11-16	2.87	3.25	2.90	3.1	0.004	0.51	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.58	0.0	0.04	22.84	0.00	1.935	5.55	2.71	0.8	99.2	0.0	2.81	2.38	0.82	0.85	3.67	6971	592	6	111	4	0	0	logfile
✔	8HH9	34756	2025-06-21	2022-11-16	3.6	3.44	3.45	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.007	0.70	0.0	0.05	15.37	0.00	1.866	6.00	1.71	3.7	96.3	0.0	0.45	0.32	0.83	0.88	2.30	24250	3129	13	0	12	0	0	logfile

• ← previous
• Page 316 of 700
• next →