Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HH7	34754	2025-06-21	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.003	0.51	0.0	0.04	14.54	0.00	1.996	3.02	0.70	2.2	97.8	0.0	1.73	0.91	0.84	0.93	3.82	24250	3129	13	0	12	0	0	logfile
✔	8HH6	34753	2025-06-21	2022-11-16	2.9	3.16	3.04	3.1	0.003	0.58	0.0	0.04	13.71	0.00	2.002	5.07	0.00	2.3	97.7	0.0	1.53	0.80	0.89	3.28	3.1	0.005	0.62	0.0	0.05	15.76	0.00	1.894	4.25	1.95	3.3	96.7	0.0	1.16	1.30	0.80	0.91	3.14	24277	3129	13	0	13	0	0	logfile
✔	8BPC	16149	2025-06-07	2022-11-16	2.8	3.02	2.95	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.54	0.0	0.04	18.08	0.00	1.959	6.56	3.07	2.7	97.3	0.0	1.44	1.64	0.71	0.80	2.69	8433	1030	7	0	6	44	0	logfile
✔	8HH9	34756	2025-06-21	2022-11-16	3.6	3.44	3.45	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.007	0.70	0.0	0.05	15.37	0.00	1.866	6.00	1.71	3.7	96.3	0.0	0.45	0.32	0.83	0.88	2.30	24250	3129	13	0	12	0	0	logfile
✔	8HHC	34760	2025-06-21	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.66	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.003	0.52	0.0	0.04	14.79	0.00	1.937	4.48	0.86	2.7	97.3	0.0	1.25	0.27	0.82	0.89	2.70	24249	3129	12	0	11	0	0	logfile
✔	8F6K	28886	2025-06-15	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.87	0.00	1.876	10.11	1.76	6.6	93.1	0.4	1.10	0.51	0.49	0.73	2.29	17298	1132	8	0	4	0	8586	logfile
✔	8F6H	28883	2025-06-18	2022-11-16	3.9	4.17	3.96	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	4.1	0.004	0.84	0.0	0.04	15.26	0.00	1.786	7.17	1.40	7.7	92.0	0.2	-0.07	0.47	0.72	0.79	2.35	20768	1358	8	0	6	0	10347	logfile
✔	8F6P	28887	2025-06-16	2022-11-16	3.2	3.45	3.25	3.5	0.010	1.34	0.0	0.05	19.79	0.00	2.073	8.63	0.12	3.6	96.4	0.0	1.91	0.56	0.77	2.70	3.5	0.003	0.50	0.0	0.03	14.59	0.00	2.401	9.70	1.41	3.3	96.7	0.0	2.29	0.33	0.56	0.80	2.35	17507	1091	4	0	34	0	8229	logfile
✔	8F6J	28885	2025-06-09	2022-11-16	3.7	3.93	3.63	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.66	0.0	0.04	16.24	0.00	2.096	7.71	2.53	6.3	93.4	0.4	-0.48	0.45	0.72	0.77	1.86	10472	1366	8	0	8	0	0	logfile
✔	8F5Z	28869	2025-06-12	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.004	0.67	0.0	0.04	17.72	0.00	2.457	9.47	4.09	3.3	96.7	0.0	0.44	0.91	0.75	0.76	1.90	13598	1724	4	0	2	0	0	logfile
✘	8HGP	34745	2025-06-08	2022-11-15	4.53	2.79	4.46	2.3	0.003	0.70	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9169	1172	6	0	8	0	0	logfile
✔	8HGM	34742	2025-06-05	2022-11-15	3.4	4.02	3.46	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.64	0.0	0.04	14.38	0.00	2.481	6.67	1.86	3.0	97.0	0.0	0.40	0.43	0.82	0.83	2.58	4886	632	4	0	2	0	0	logfile
✔	8HGS	34746	2025-06-16	2022-11-15	3.81	2.51	3.79	3.8	0.004	0.79	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.004	0.87	0.0	0.05	14.79	0.00	2.482	9.17	2.23	8.1	91.8	0.1	-1.49	1.48	0.71	0.70	1.70	10080	1280	8	0	12	0	0	logfile
✔	8HGo	34744	2025-06-08	2022-11-15	3.31	2.35	3.31	2.2	0.004	0.73	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.2	0.005	0.82	0.0	0.05	14.67	0.00	2.402	10.13	2.44	8.3	91.7	0.0	-2.46	1.35	0.75	0.75	3.06	9227	1178	6	0	8	0	0	logfile
✔	8BoB	16140	2025-06-11	2022-11-15	2.94	3.13	2.91	3.0	0.009	0.87	0.0	0.06	15.31	0.00	2.208	10.38	3.17	4.2	95.5	0.3	-1.98	0.85	0.84	3.45	3.0	0.003	0.61	0.0	0.04	15.74	0.00	2.475	4.30	0.75	2.4	97.6	0.0	1.18	0.66	0.86	0.88	2.58	12712	1604	8	0	4	0	0	logfile
✔	8HGL	34741	2025-06-29	2022-11-15	2.9	3.56	2.96	3.2	0.006	0.74	0.0	0.05	14.18	0.00	2.181	7.33	0.00	5.3	94.7	0.0	-0.39	0.81	0.77	2.77	3.2	0.003	0.65	0.0	0.04	14.57	0.00	2.446	6.17	1.07	4.2	95.8	0.0	0.16	0.55	0.85	0.85	2.69	34170	4317	24	0	60	0	0	logfile
✔	8BoN	16144	2025-06-22	2022-11-15	3.2	3.14	3.20	3.1	0.005	0.59	0.0	0.04	13.29	0.00	2.145	5.32	0.00	3.0	97.0	0.0	0.15	0.76	0.79	2.78	3.1	0.003	0.58	0.0	0.04	13.94	0.00	2.370	4.53	1.29	3.2	96.8	0.0	0.16	1.27	0.77	0.79	2.36	25930	3246	25	0	52	0	0	logfile
✔	8BNZ	16137	2025-06-12	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.67	0.0	0.04	15.95	0.00	2.479	9.28	2.14	4.6	95.3	0.1	-0.23	1.59	0.70	0.75	1.93	14073	1807	6	0	0	0	0	logfile
✔	8BNU	16135	2025-06-21	2022-11-14	3.55	3.69	3.51	3.6	0.006	0.74	0.0	0.05	13.70	0.01	2.110	13.64	0.18	8.2	91.4	0.4	-0.84	0.84	0.83	1.95	3.6	0.004	0.68	0.0	0.04	15.63	0.00	2.506	9.02	1.99	6.5	93.2	0.3	-0.30	2.54	0.86	0.86	1.37	16913	2292	4	0	0	0	0	logfile
✔	8HGG	34738	2025-06-21	2022-11-14	3.64	3.02	3.51	3.4	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.003	0.69	1.0	0.05	14.34	0.00	2.191	7.06	2.26	3.2	96.8	0.0	-0.75	0.58	0.69	0.72	2.21	25404	3238	6	0	2	0	0	logfile

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