Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HGG	34738	2025-06-21	2022-11-14	3.64	3.02	3.51	3.4	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.003	0.69	1.0	0.05	14.34	0.00	2.191	7.06	2.26	3.2	96.8	0.0	-0.75	0.58	0.69	0.72	2.21	25404	3238	6	0	2	0	0	logfile
✔	8Bo2	16138	2025-06-12	2022-11-14	3.1	3.79	3.14	3.5	0.017	1.94	10.0	0.11	14.14	0.02	2.505	4.29	0.47	6.7	93.2	0.1	-0.67	0.59	0.53	2.30	3.5	0.005	0.72	0.0	0.05	15.92	0.00	2.460	13.38	1.75	6.5	93.3	0.2	-0.83	1.10	0.77	0.81	1.64	14037	1803	6	0	0	0	0	logfile
✔	8BNU	16135	2025-06-21	2022-11-14	3.55	3.69	3.51	3.6	0.006	0.74	0.0	0.05	13.70	0.01	2.110	13.64	0.18	8.2	91.4	0.4	-0.84	0.84	0.83	1.95	3.6	0.004	0.68	0.0	0.04	15.63	0.00	2.506	9.02	1.99	6.5	93.2	0.3	-0.30	2.54	0.86	0.86	1.37	16913	2292	4	0	0	0	0	logfile
✔	8HFY	34728	2025-06-10	2022-11-13	3.21	3.55	3.27	3.5	0.003	0.56	0.0	0.04	15.55	0.00	2.081	4.76	1.44	3.2	96.8	0.0	0.29	0.74	0.83	2.20	3.5	0.003	0.57	0.0	0.04	14.60	0.00	2.024	5.15	1.15	3.7	96.3	0.0	0.50	0.59	0.76	0.87	1.87	6568	789	6	0	10	0	0	logfile
✔	8F5B	28864	2025-06-13	2022-11-13	3.95	4.66	3.91	4.1	0.004	0.72	0.0	0.04	16.73	0.00	1.993	14.24	0.07	6.4	93.6	0.0	0.29	0.71	0.76	0.75	4.1	0.003	0.72	0.0	0.04	15.19	0.00	1.986	10.33	1.49	6.2	93.8	0.0	0.35	0.32	0.71	0.76	0.14	14152	1924	4	0	14	0	0	logfile
✔	8HG0	34730	2025-06-05	2022-11-13	3.51	4.44	3.51	3.7	0.005	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	3.7	0.004	0.62	0.0	0.04	16.38	0.00	1.992	7.22	2.73	2.4	97.5	0.1	1.07	1.02	0.87	0.88	1.46	6470	790	4	0	4	0	0	logfile
✔	8HG1	34731	2025-06-14	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.32	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.005	0.65	0.0	0.04	17.80	0.00	2.113	5.41	2.64	5.0	94.7	0.2	0.21	0.42	0.81	0.83	3.44	14155	1642	6	36	2	0	0	logfile
✔	8HFS	34726	2025-06-14	2022-11-12	2.98	3.10	2.88	3.1	0.003	0.65	0.0	0.04	16.84	0.00	2.164	12.21	3.28	7.5	92.5	0.0	0.18	0.67	0.78	0.87	3.1	0.003	0.66	0.0	0.04	17.13	0.01	2.391	10.72	5.66	6.8	93.2	0.0	0.19	0.35	0.68	0.79	0.78	16216	1798	11	0	3	0	0	logfile
✔	8F4P	28856	2025-06-25	2022-11-11	3.7	3.87	—	3.8	0.004	0.61	0.0	0.05	17.27	0.00	2.197	10.81	0.51	6.6	93.3	0.1	-0.97	0.56	0.76	1.49	3.8	0.003	0.61	0.0	0.04	15.42	0.00	2.400	7.91	2.88	5.4	94.5	0.1	-0.65	0.31	0.52	0.75	1.57	26635	3342	13	0	37	0	0	logfile
✔	8HFL	34722	2025-06-04	2022-11-11	3.0	3.38	3.04	3.3	0.003	0.55	1.0	0.04	15.47	0.00	1.981	5.43	1.72	2.7	97.1	0.2	1.46	0.60	0.82	2.33	3.4	0.003	0.57	0.0	0.04	15.77	0.00	2.461	5.09	2.36	3.5	96.5	0.0	1.58	0.31	0.58	0.81	2.65	4441	553	2	0	2	3	0	logfile
✔	8F4N	28855	2025-06-13	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.56	0.0	0.04	15.74	0.00	2.363	8.08	2.72	1.5	98.5	0.0	1.90	1.25	0.65	0.83	2.84	15574	2043	2	0	0	0	0	logfile
✔	8BMW	16126	2025-06-24	2022-11-11	3.5	4.40	—	4.0	0.003	0.54	1.0	0.04	12.90	0.00	2.196	11.99	0.49	6.1	93.8	0.1	0.69	0.90	0.85	0.96	4.0	0.004	0.76	0.0	0.04	15.84	0.00	2.380	15.20	3.20	5.9	94.0	0.1	-0.05	0.81	0.90	0.85	0.93	28658	3475	15	48	0	0	0	logfile
✔	8F4X	28858	2025-06-27	2022-11-11	3.01	3.72	3.02	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.002	0.43	0.0	0.03	17.28	0.00	2.601	2.72	1.06	0.1	99.9	0.0	5.25	0.45	0.85	0.85	0.44	32760	4020	60	0	0	0	0	logfile
✔	8F56	28861	2025-06-13	2022-11-11	2.98	3.18	3.08	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.28	0.00	2.409	8.54	2.88	1.7	98.3	0.0	1.65	1.29	0.67	0.84	2.23	15631	2039	2	0	0	0	0	logfile
✔	8F4R	28857	2025-06-20	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	11.50	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.004	0.70	0.0	0.04	14.55	0.00	2.314	7.29	2.43	1.2	98.8	0.0	1.91	1.23	0.72	0.86	2.49	23675	3097	4	0	1	0	0	logfile
✔	8BMR	16122	2025-06-05	2022-11-10	3.8	4.05	3.84	4.0	0.003	0.61	0.0	0.04	13.55	0.00	2.228	8.06	0.00	5.0	95.0	0.0	-0.04	0.69	0.82	1.29	4.0	0.003	0.68	0.0	0.04	16.15	0.00	2.533	7.98	2.76	4.0	96.0	0.0	0.50	0.39	0.70	0.83	1.18	6330	808	3	0	0	0	0	logfile
✔	8BMS	16124	2025-06-05	2022-11-10	2.6	2.85	2.63	3.0	0.003	0.52	0.0	0.04	14.83	0.00	1.956	6.11	0.00	2.2	97.8	0.0	0.83	0.63	0.84	3.85	3.0	0.003	0.57	0.0	0.04	17.10	0.00	1.859	5.73	1.71	1.7	98.3	0.0	1.12	0.88	0.62	0.84	3.93	6570	822	8	0	4	72	0	logfile
✔	8HFF	34719	2025-06-04	2022-11-10	2.86	3.35	2.95	3.3	0.004	0.54	0.0	0.04	16.02	0.00	2.142	6.04	1.08	2.8	97.2	0.0	1.96	0.54	0.78	3.07	3.3	0.002	0.49	0.0	0.04	16.02	0.00	2.525	5.01	0.65	1.8	98.2	0.0	2.18	0.30	0.50	0.75	2.45	4399	547	2	0	2	2	0	logfile
✔	8BLQ	16113	2025-06-08	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.63	0.0	0.04	14.15	0.00	2.573	12.71	1.07	5.2	94.8	0.0	-1.74	1.13	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8HFE	34718	2025-06-04	2022-11-10	2.5	2.87	2.58	2.8	0.005	0.66	0.0	0.04	14.85	0.00	2.082	5.59	1.08	2.6	97.2	0.2	1.37	0.63	0.84	3.53	2.8	0.004	0.58	0.0	0.04	15.43	0.00	2.528	3.20	2.16	2.6	97.2	0.2	1.96	0.32	0.65	0.85	3.37	4413	548	2	0	1	22	0	logfile

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