Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BMR	16122	2025-06-05	2022-11-10	3.8	4.05	3.84	4.0	0.003	0.61	0.0	0.04	13.55	0.00	2.228	8.06	0.00	5.0	95.0	0.0	-0.04	0.69	0.82	1.29	4.0	0.003	0.68	0.0	0.04	16.15	0.00	2.533	7.98	2.76	4.0	96.0	0.0	0.50	0.39	0.70	0.83	1.18	6330	808	3	0	0	0	0	logfile
✔	8BLP	16112	2025-06-08	2022-11-10	2.6	2.86	2.66	2.9	0.010	1.37	0.0	0.05	19.49	0.01	2.208	7.09	0.35	4.8	95.2	0.0	-1.57	0.67	0.86	4.68	2.9	0.003	0.56	0.0	0.04	15.35	0.00	2.623	5.88	2.31	2.4	97.6	0.0	2.49	1.20	0.65	0.86	4.10	9378	1065	9	0	66	66	0	logfile
✔	8HFG	34720	2025-06-04	2022-11-10	3.0	3.32	3.04	3.3	0.006	0.80	3.0	0.04	15.71	0.01	2.067	5.60	1.96	3.2	96.7	0.2	1.59	0.54	0.67	1.17	3.3	0.004	0.60	0.0	0.04	16.45	0.00	2.608	7.43	2.39	2.2	97.8	0.0	1.71	1.75	0.65	0.82	3.15	4394	545	2	0	3	5	0	logfile
✔	8HFF	34719	2025-06-04	2022-11-10	2.86	3.35	2.95	3.3	0.004	0.54	0.0	0.04	16.02	0.00	2.142	6.04	1.08	2.8	97.2	0.0	1.96	0.54	0.78	3.07	3.3	0.002	0.49	0.0	0.04	16.02	0.00	2.525	5.01	0.65	1.8	98.2	0.0	2.18	0.30	0.50	0.75	2.45	4399	547	2	0	2	2	0	logfile
✔	8HFE	34718	2025-06-04	2022-11-10	2.5	2.87	2.58	2.8	0.005	0.66	0.0	0.04	14.85	0.00	2.082	5.59	1.08	2.6	97.2	0.2	1.37	0.63	0.84	3.53	2.8	0.004	0.58	0.0	0.04	15.43	0.00	2.528	3.20	2.16	2.6	97.2	0.2	1.96	0.32	0.65	0.85	3.37	4413	548	2	0	1	22	0	logfile
✔	8BMS	16124	2025-06-05	2022-11-10	2.6	2.85	2.63	3.0	0.003	0.52	0.0	0.04	14.83	0.00	1.956	6.11	0.00	2.2	97.8	0.0	0.83	0.63	0.84	3.85	3.0	0.003	0.57	0.0	0.04	17.10	0.00	1.859	5.73	1.71	1.7	98.3	0.0	1.12	0.88	0.62	0.84	3.93	6570	822	8	0	4	72	0	logfile
✔	8HFi	34721	2025-06-04	2022-11-10	2.5	2.71	2.51	2.7	0.003	0.63	0.0	0.04	15.56	0.00	2.008	3.64	1.08	2.2	97.8	0.0	1.51	0.75	0.88	3.18	2.7	0.003	0.57	0.0	0.04	15.74	0.00	2.574	3.18	1.73	1.7	98.3	0.0	1.89	0.34	0.69	0.87	2.93	4443	548	2	0	2	39	0	logfile
✔	8BLQ	16113	2025-06-08	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.63	0.0	0.04	14.15	0.00	2.573	12.71	1.07	5.2	94.8	0.0	-1.74	1.13	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8BLA	16104	2025-06-08	2022-11-09	3.3	3.52	3.35	3.5	0.004	0.65	0.0	0.05	15.40	0.00	2.234	4.01	0.00	1.4	98.6	0.0	-1.26	0.67	0.83	4.32	3.5	0.003	0.61	0.0	0.05	15.78	0.00	2.599	5.47	3.76	3.0	97.0	0.0	-1.41	1.22	0.63	0.81	3.53	9400	1055	20	0	30	0	0	logfile
✔	8F32	28829	2025-06-11	2022-11-09	3.71	3.36	3.62	3.4	0.005	0.84	0.0	0.06	13.43	0.01	2.201	12.25	0.00	4.3	95.7	0.0	-1.60	0.61	0.79	3.14	3.4	0.003	0.55	0.0	0.04	16.13	0.00	2.468	7.21	3.42	3.5	96.5	0.0	0.24	0.45	0.62	0.79	3.22	12545	1535	10	0	5	0	0	logfile
✔	8F35	28832	2025-06-11	2022-11-09	3.17	2.86	3.36	3.0	0.005	0.75	0.0	0.05	14.23	0.01	2.235	9.63	0.00	8.9	91.1	0.0	-1.03	0.60	0.79	2.87	3.0	0.006	0.65	0.0	0.05	15.81	0.00	2.578	8.35	2.47	6.3	93.7	0.0	-0.46	0.86	0.61	0.84	3.70	12525	1535	5	0	0	0	0	logfile
✔	8HF0	34707	2025-06-25	2022-11-09	3.72	3.91	3.82	3.8	0.003	0.57	0.0	0.04	15.85	0.00	2.157	10.42	0.00	3.4	96.6	0.0	0.32	0.88	0.79	1.25	3.8	0.003	0.62	0.0	0.04	17.26	0.00	2.114	9.94	1.93	3.6	96.3	0.1	0.33	0.39	0.88	0.80	0.99	29510	3388	7	97	0	0	0	logfile
✔	8BKG	16097	2025-06-28	2022-11-09	3.2	3.18	3.17	3.2	0.003	0.57	0.0	0.04	15.30	0.00	2.241	4.64	0.57	3.6	96.4	0.0	-0.35	0.74	0.84	2.76	3.2	0.005	0.61	0.0	0.05	15.90	0.00	2.549	5.67	2.00	3.8	96.1	0.1	-0.28	0.37	0.78	0.88	3.10	32824	4088	4	0	0	0	0	logfile
✔	8F34	28831	2025-06-11	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.65	0.0	0.05	16.24	0.00	2.598	6.97	2.84	5.6	94.4	0.0	-0.28	0.75	0.61	0.83	3.23	12545	1535	10	0	5	0	0	logfile
✔	8HF4	34712	2025-06-07	2022-11-09	2.8	3.66	3.30	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.56	0.0	0.04	16.53	0.00	2.526	4.41	1.52	4.2	95.8	0.0	2.36	0.95	0.70	0.84	1.87	8916	1126	4	0	2	0	0	logfile
✔	8HF7	34715	2025-06-07	2022-11-09	3.8	4.66	1.86	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.2	0.003	0.81	0.0	0.04	16.13	0.00	2.457	11.48	2.43	6.2	93.6	0.2	0.14	0.58	0.64	0.76	0.61	8978	1126	4	0	26	0	0	logfile
✔	8HEZ	34705	2025-06-05	2022-11-09	2.8	2.66	2.63	2.8	0.015	2.21	2.0	0.09	13.75	0.00	2.144	5.35	2.82	2.6	97.2	0.2	-2.33	0.51	0.78	4.26	2.8	0.003	0.65	0.0	0.04	14.84	0.00	2.229	7.55	1.41	2.5	97.5	0.0	2.22	1.23	0.63	0.84	3.68	4739	611	3	0	3	4	0	logfile
✔	8BL8	16103	2025-06-12	2022-11-09	3.21	3.58	3.33	3.5	0.004	0.63	1.0	0.05	13.41	0.00	2.239	3.51	0.06	2.5	97.5	0.0	0.16	0.70	0.84	3.38	3.5	0.003	0.59	0.0	0.04	14.76	0.00	2.537	5.11	2.39	2.5	97.5	0.0	0.90	0.37	0.68	0.84	3.00	14019	1656	20	0	25	0	0	logfile
✔	8HF2	34710	2025-06-05	2022-11-09	4.14	5.08	4.02	4.7	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.04	13.45	0.00	2.496	10.53	0.00	2.7	97.3	0.0	0.95	2.66	0.51	0.79	—	4660	600	5	0	0	0	0	logfile
✔	8BLB	16105	2025-06-08	2022-11-09	3.3	3.54	3.32	3.6	0.004	0.66	0.0	0.05	15.18	0.00	2.171	3.36	0.00	1.4	98.6	0.0	-0.87	0.66	0.81	3.63	3.6	0.003	0.66	0.0	0.05	15.38	0.00	2.388	5.69	3.86	2.1	97.9	0.0	-1.41	1.25	0.64	0.82	2.87	9400	1055	20	0	30	0	0	logfile

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