Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F34	28831	2025-06-11	2022-11-09	3.12	2.66	3.35	2.9	0.005	0.77	0.0	0.06	14.08	0.00	2.333	6.69	0.00	6.6	93.4	0.0	-0.75	0.62	0.80	3.31	2.9	0.005	0.65	0.0	0.05	16.24	0.00	2.598	6.97	2.84	5.6	94.4	0.0	-0.28	0.75	0.61	0.83	3.23	12545	1535	10	0	5	0	0	logfile
✔	8F38	28833	2025-06-25	2022-11-09	2.64	2.85	2.70	2.8	0.005	0.80	0.0	0.05	19.17	0.01	2.148	3.68	4.08	2.3	97.4	0.3	0.19	0.71	0.84	3.74	2.8	0.003	0.57	0.0	0.04	16.62	0.00	2.449	2.54	3.52	2.3	97.5	0.1	0.74	0.99	0.75	0.89	3.90	16952	2121	21	0	33	50	0	logfile
✔	8BKG	16097	2025-06-28	2022-11-09	3.2	3.18	3.17	3.2	0.003	0.57	0.0	0.04	15.30	0.00	2.241	4.64	0.57	3.6	96.4	0.0	-0.35	0.74	0.84	2.76	3.2	0.005	0.61	0.0	0.05	15.90	0.00	2.549	5.67	2.00	3.8	96.1	0.1	-0.28	0.37	0.78	0.88	3.10	32824	4088	4	0	0	0	0	logfile
✔	8HEZ	34705	2025-06-05	2022-11-09	2.8	2.66	2.63	2.8	0.015	2.21	2.0	0.09	13.75	0.00	2.144	5.35	2.82	2.6	97.2	0.2	-2.33	0.51	0.78	4.26	2.8	0.003	0.65	0.0	0.04	14.84	0.00	2.229	7.55	1.41	2.5	97.5	0.0	2.22	1.23	0.63	0.84	3.68	4739	611	3	0	3	4	0	logfile
✔	8HF2	34710	2025-06-05	2022-11-09	4.14	5.08	4.02	4.7	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.04	13.45	0.00	2.496	10.53	0.00	2.7	97.3	0.0	0.95	2.66	0.51	0.79	—	4660	600	5	0	0	0	0	logfile
✔	8BK7	16091	2025-06-27	2022-11-08	3.3	3.07	3.31	3.2	0.004	0.77	0.0	0.05	18.14	0.01	2.168	7.75	2.95	3.6	96.4	0.0	-0.64	0.55	0.80	2.37	3.2	0.003	0.61	0.0	0.04	17.98	0.00	2.527	7.09	4.46	3.5	96.5	0.0	-0.25	0.48	0.57	0.82	2.71	32500	4044	4	0	0	0	0	logfile
✔	8BK8	16092	2025-06-28	2022-11-08	2.9	2.39	2.84	2.7	0.003	0.66	0.0	0.05	13.28	0.01	2.252	5.52	0.00	3.2	96.8	0.0	-0.31	0.59	0.80	4.12	2.6	0.005	0.63	0.0	0.05	16.55	0.00	2.553	5.89	2.52	2.7	97.3	0.0	0.07	0.45	0.59	0.83	4.33	32500	4044	4	0	0	0	0	logfile
✔	8HEC	34687	2025-06-26	2022-11-08	3.5	4.09	3.54	3.8	0.004	0.62	0.0	0.05	14.80	0.00	2.203	8.43	0.12	4.7	95.1	0.1	-0.28	0.82	0.84	1.80	3.8	0.004	0.60	0.0	0.04	14.91	0.00	2.436	6.60	3.05	5.3	94.7	0.0	-0.13	0.29	0.83	0.85	1.88	29925	3769	29	0	61	0	0	logfile
✔	8HEE	34689	2025-06-18	2022-11-08	3.2	3.38	3.20	3.4	0.006	0.88	0.0	0.05	15.88	0.01	1.796	14.37	0.64	7.5	92.5	0.0	-1.31	0.73	0.78	2.45	3.4	0.005	0.68	0.0	0.05	16.69	0.00	2.426	9.21	3.78	7.1	92.9	0.0	-1.15	0.59	0.72	0.79	2.68	21905	2775	15	0	0	0	0	logfile
✔	8BKB	16095	2025-06-29	2022-11-08	2.2	1.97	2.08	2.0	0.003	0.61	0.0	0.04	17.88	0.00	2.225	1.59	1.40	1.4	98.6	0.0	4.82	0.71	0.86	6.67	2.0	0.004	0.62	0.0	0.04	17.72	0.00	2.602	3.25	2.06	2.1	97.9	0.0	4.88	0.14	0.71	0.87	6.80	35139	4128	54	0	6	1317	0	logfile
✔	8F2U	28827	2025-06-15	2022-11-08	3.53	3.13	3.83	3.3	0.002	0.56	0.0	0.07	15.52	0.00	1.983	6.37	0.00	2.8	97.2	0.0	1.04	0.60	0.70	1.53	3.2	0.004	0.61	0.0	0.04	17.46	0.00	2.473	5.97	1.48	3.2	96.8	0.0	0.82	2.23	0.60	0.72	1.52	17684	2236	12	0	0	0	0	logfile
✔	8F2M	28822	2025-06-05	2022-11-08	3.7	3.60	3.51	3.6	0.003	0.67	0.0	0.04	16.38	0.01	2.253	11.21	0.38	5.0	94.0	1.0	-0.85	0.33	0.72	1.58	3.6	0.004	0.82	0.0	0.05	16.82	0.01	2.394	8.65	2.88	7.4	91.6	1.0	-0.54	0.79	0.37	0.79	1.68	4696	592	4	0	0	0	0	logfile
✔	8HEG	34690	2025-06-22	2022-11-08	3.2	3.40	3.27	3.4	0.030	0.70	0.0	0.04	15.87	0.01	0.548	16.75	1.09	7.1	92.6	0.3	-1.33	0.69	0.78	2.57	3.4	0.005	0.73	0.0	0.05	16.60	0.01	1.436	5.91	3.21	7.1	92.7	0.2	-1.19	1.18	0.71	0.82	2.47	26595	3385	20	0	0	0	0	logfile
✔	8HEB	34686	2025-06-26	2022-11-08	3.53	3.94	3.42	3.8	0.004	0.60	0.0	0.05	14.17	0.00	2.053	6.58	0.03	4.5	95.4	0.1	-0.25	0.82	0.84	2.43	3.8	0.003	0.60	0.0	0.04	14.54	0.00	2.355	5.92	2.56	4.2	95.8	0.0	-0.04	0.36	0.83	0.86	2.24	29912	3769	30	0	63	0	0	logfile
✔	8F2R	28825	2025-06-24	2022-11-08	3.12	3.35	3.19	3.4	0.004	0.80	0.0	0.04	15.27	0.01	2.031	6.01	0.12	2.2	97.6	0.2	0.09	0.64	0.69	2.21	3.4	0.003	0.56	0.0	0.04	16.25	0.00	2.341	4.10	1.18	2.3	97.6	0.1	1.98	1.65	0.65	0.77	2.27	29276	1837	10	0	0	0	14772	logfile
✔	8BK9	16093	2025-06-29	2022-11-08	2.1	1.91	2.02	1.9	0.003	0.61	0.0	0.04	17.00	0.00	2.222	1.87	0.49	1.2	98.8	0.0	4.72	0.69	0.87	6.31	1.9	0.002	0.50	0.0	0.03	17.14	0.00	2.568	3.22	0.03	1.8	98.2	0.0	5.56	1.30	0.69	0.87	6.19	34978	4128	54	0	6	1156	0	logfile
✔	8HED	34688	2025-06-04	2022-11-08	3.59	4.08	3.67	3.9	0.004	0.68	0.0	0.04	13.89	0.00	2.247	6.94	0.00	6.7	93.1	0.2	-0.46	0.77	0.83	2.95	3.9	0.004	0.69	0.0	0.04	14.79	0.00	2.525	6.17	3.92	6.9	93.1	0.0	-0.70	0.50	0.77	0.84	2.09	3318	427	5	0	3	0	0	logfile
✔	8F2B	28812	2025-06-09	2022-11-07	2.0	1.79	2.01	1.9	0.004	0.59	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.002	0.58	0.0	0.04	15.80	0.00	2.526	5.13	0.94	2.3	97.7	0.0	1.44	0.94	0.55	0.77	5.05	10360	1273	13	0	16	31	0	logfile
✔	8F2A	28810	2025-06-08	2022-11-07	2.2	2.40	2.31	2.5	0.004	0.61	0.0	0.05	13.83	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.002	0.56	0.0	0.04	15.74	0.00	2.506	5.03	0.95	1.7	98.3	0.0	1.20	0.47	0.64	0.83	3.54	10044	1276	10	0	5	0	0	logfile
✔	8HDZ	34684	2025-06-10	2022-11-07	3.05	3.28	3.11	3.3	0.002	0.44	0.0	0.04	13.94	0.00	2.174	9.75	0.00	4.3	95.7	0.1	0.18	0.49	0.48	0.43	3.3	0.002	0.60	0.0	0.04	16.11	0.00	2.455	10.56	1.72	4.6	95.2	0.1	-0.28	1.02	0.54	0.57	0.62	11861	1457	3	0	0	0	0	logfile

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