Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F1i	28797	2025-06-26	2022-11-05	3.0	3.91	—	3.4	0.003	0.53	0.0	0.04	14.60	0.00	2.170	5.59	0.89	3.4	96.6	0.0	-1.10	0.88	0.84	2.24	3.4	0.003	0.58	0.0	0.04	16.27	0.00	2.091	4.82	0.99	3.4	96.6	0.0	0.50	1.18	0.90	0.86	1.78	30670	3678	14	91	3	8	0	logfile
✔	8F1J	28785	2025-06-26	2022-11-05	2.6	3.66	2.67	3.1	0.002	0.44	0.0	0.04	13.90	0.00	2.096	4.27	0.98	2.2	97.8	0.0	0.89	0.90	0.85	2.55	3.1	0.002	0.53	0.0	0.04	15.83	0.00	2.035	3.60	0.73	2.5	97.5	0.0	1.18	1.60	0.88	0.85	2.01	30829	3688	13	94	3	7	0	logfile
✔	8HDP	34677	2025-06-07	2022-11-05	3.2	3.72	3.08	3.5	0.003	0.75	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.82	0.0	0.06	15.47	0.00	2.473	9.49	2.62	3.1	96.9	0.0	0.60	2.04	0.70	0.82	1.80	8282	1041	6	0	5	0	0	logfile
✔	8F1K	28791	2025-06-26	2022-11-05	2.8	3.72	2.83	3.2	0.002	0.47	0.0	0.04	15.01	0.00	2.130	4.40	1.30	2.3	97.7	0.0	0.58	0.88	0.82	2.68	3.2	0.003	0.54	0.0	0.04	16.29	0.00	2.065	3.94	0.66	2.3	97.7	0.0	1.37	1.61	0.89	0.85	2.24	30854	3689	14	95	3	10	0	logfile
✔	8BJF	16088	2025-06-09	2022-11-04	3.0	3.24	3.01	3.3	0.005	0.76	0.0	0.05	13.71	0.01	2.273	3.58	0.38	2.4	97.6	0.0	-1.24	0.61	0.85	3.29	3.2	0.005	0.63	0.0	0.04	14.62	0.00	2.551	5.75	0.96	2.0	98.0	0.0	1.39	0.43	0.57	0.84	2.32	9741	1195	2	0	6	0	0	logfile
✔	8BJM	16089	2025-06-14	2022-11-04	2.2	2.55	2.08	2.4	0.005	0.55	0.0	0.04	13.85	0.00	2.200	4.88	1.17	0.5	99.5	0.0	2.08	0.83	0.88	5.60	2.4	0.003	0.56	0.0	0.04	16.54	0.00	2.509	3.67	1.64	0.6	99.4	0.0	2.45	0.31	0.84	0.89	5.03	16655	2050	22	0	0	498	0	logfile
✔	8F1D	28795	2025-06-11	2022-11-04	2.94	3.13	2.94	3.2	0.004	0.51	0.0	0.04	10.40	0.00	2.321	4.94	0.59	4.4	95.6	0.0	1.12	0.43	0.66	4.21	3.2	0.005	0.68	0.0	0.04	13.60	0.00	2.525	4.59	1.48	6.0	94.0	0.0	0.52	0.43	0.65	0.87	3.44	12888	1576	8	0	12	0	0	logfile
✔	8F1E	28796	2025-06-09	2022-11-04	3.28	4.11	3.33	3.8	0.003	0.67	0.0	0.04	17.52	0.00	1.853	11.76	0.17	1.7	98.3	0.0	1.76	0.88	0.84	1.17	3.7	0.002	0.57	0.0	0.04	17.45	0.00	1.941	8.88	2.26	2.0	98.0	0.0	2.25	0.93	0.90	0.90	1.16	10174	1273	5	0	2	0	0	logfile
✔	8HDH	34673	2025-06-05	2022-11-04	3.1	2.51	3.15	3.1	0.018	2.23	1.0	0.09	14.06	0.01	2.036	6.66	1.00	3.9	95.6	0.5	-2.42	0.57	0.77	3.81	3.1	0.003	0.62	0.0	0.04	15.32	0.00	2.237	6.14	2.60	2.5	97.5	0.0	2.37	1.12	0.64	0.80	3.12	4778	615	3	0	3	4	0	logfile
✔	8F1C	28793	2025-06-22	2022-11-04	2.92	3.13	2.93	3.1	0.004	0.53	0.0	0.04	11.03	0.00	2.225	3.26	0.61	7.0	93.0	0.0	0.84	0.65	0.84	4.27	3.2	0.004	0.56	0.0	0.04	13.84	0.00	2.409	2.82	1.15	5.9	94.1	0.0	0.99	0.51	0.65	0.87	2.78	25116	1576	8	0	16	0	12184	logfile
✔	8F19	28788	2025-06-08	2022-11-04	3.49	3.69	3.49	3.6	0.003	0.67	0.0	0.04	14.18	0.00	1.897	7.81	0.20	0.9	99.1	0.0	1.08	0.72	0.78	2.20	3.6	0.003	0.58	0.0	0.04	15.87	0.00	1.958	5.87	1.01	1.7	98.3	0.0	2.38	1.58	0.73	0.81	1.74	8717	1087	3	0	2	0	0	logfile
✔	8F0X	28782	2025-06-07	2022-11-04	3.21	3.54	3.22	3.4	0.004	0.65	0.0	0.04	13.35	0.00	2.221	7.37	0.50	1.7	98.3	0.0	0.47	0.62	0.80	3.78	3.4	0.003	0.52	0.0	0.04	15.19	0.00	2.131	5.10	1.10	1.3	98.7	0.0	2.89	0.68	0.62	0.82	1.95	8743	1101	3	0	0	0	0	logfile
✔	8BJA	16087	2025-06-22	2022-11-03	3.0	2.93	3.30	3.3	0.004	0.81	0.0	0.04	17.12	0.01	2.169	11.25	3.67	5.4	94.4	0.2	-0.80	0.78	0.75	1.53	3.3	0.005	0.96	1.0	0.04	17.36	0.01	1.809	12.64	2.78	5.3	94.6	0.1	-0.11	0.57	0.77	0.75	1.47	25204	3201	4	0	6	0	0	logfile
✔	8HD6	34670	2025-06-07	2022-11-03	3.73	4.52	3.72	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.74	0.0	0.04	24.99	0.01	1.775	19.55	0.00	0.0	0.0	0.0	—	2.15	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	8HCX	34667	2025-06-07	2022-11-03	3.5	2.57	3.29	3.3	0.003	0.62	0.0	0.04	16.43	0.00	2.117	10.84	0.31	2.5	97.2	0.4	0.14	0.71	0.71	1.23	3.2	0.004	0.78	0.0	0.04	17.23	0.00	2.461	13.67	5.25	3.5	96.3	0.2	0.32	1.12	0.73	0.73	1.22	8933	1159	6	0	0	0	0	logfile
✔	8HD7	34671	2025-06-07	2022-11-03	3.52	3.99	3.57	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.77	0.0	0.04	23.90	0.01	1.819	13.19	0.00	0.0	0.0	0.0	—	1.49	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	8F0J	28758	2025-06-09	2022-11-03	2.0	1.77	1.99	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.54	0.0	0.04	16.70	0.00	2.482	5.17	1.21	1.7	98.3	0.0	1.80	0.82	0.54	0.79	5.40	9678	1157	12	0	18	25	0	logfile
✔	8F0o	28775	2025-06-21	2022-11-03	2.99	4.40	3.23	3.0	0.005	0.84	0.0	0.05	17.63	0.01	2.274	3.93	0.00	5.1	94.9	0.0	-2.73	0.81	0.83	1.70	3.0	0.004	0.74	0.0	0.04	15.84	0.00	2.449	10.01	0.66	5.0	95.0	0.0	0.15	0.51	0.81	0.84	1.54	24030	2968	16	0	38	0	0	logfile
✔	8F0G	28756	2025-06-17	2022-11-02	3.35	3.91	3.29	3.6	0.011	0.67	0.0	0.06	14.46	0.01	2.238	7.55	0.14	3.6	96.4	0.0	-0.20	0.79	0.84	2.12	3.6	0.003	0.57	0.0	0.04	14.59	0.00	2.540	5.60	1.61	3.6	96.4	0.0	0.34	1.37	0.80	0.85	1.79	19635	2492	11	0	24	0	0	logfile
✔	8F0A	28754	2025-06-16	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.004	0.68	0.0	0.05	13.81	0.00	2.279	5.51	1.27	1.3	98.7	0.0	1.24	2.30	0.74	0.79	3.77	18060	1212	9	0	0	0	9189	logfile

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