Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U15	26278	2025-06-05	2022-02-19	3.0	3.14	—	3.3	0.006	1.29	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	15.92	0.00	2.441	11.13	4.50	16.5	83.5	0.0	-5.24	1.40	0.27	0.70	3.10	6684	405	6	0	12	0	3255	logfile
✔	7YZ4	14387	2025-06-17	2022-02-18	3.84	3.32	4.14	3.2	0.004	0.78	0.0	0.05	11.95	0.01	2.253	1.46	0.92	3.6	96.4	0.0	-2.13	0.65	0.63	1.40	3.1	0.005	0.64	0.0	0.04	14.36	0.00	2.284	7.12	1.47	4.8	95.2	0.0	0.42	0.89	0.66	0.64	0.96	19805	1234	1	0	0	0	9953	logfile
✔	7U0J	26261	2025-06-13	2022-02-18	2.7	3.24	—	3.1	0.008	0.93	3.0	0.05	27.01	0.01	2.088	6.00	0.39	4.6	95.3	0.1	-0.97	0.80	0.82	3.63	3.1	0.005	0.61	0.0	0.04	27.37	0.00	2.499	6.94	3.13	4.6	95.4	0.0	1.41	1.11	0.77	0.79	3.45	15622	1210	12	298	0	0	0	logfile
✔	7U0P	26262	2025-06-28	2022-02-18	3.76	4.05	3.78	3.9	0.005	0.64	0.0	0.04	17.21	0.00	2.132	5.27	0.42	3.5	96.5	0.0	-0.13	0.76	0.74	1.17	3.9	0.004	0.74	0.0	0.05	16.88	0.00	1.854	6.55	3.99	3.8	96.2	0.0	-0.68	0.59	0.80	0.82	1.15	32371	4102	15	0	32	0	0	logfile
✔	7YYM	14383	2025-06-19	2022-02-18	4.19	3.71	4.37	4.2	0.004	0.80	0.0	0.05	15.16	0.01	2.262	1.61	0.18	2.9	97.1	0.0	0.72	0.70	0.70	—	4.2	0.002	0.55	0.0	0.04	15.50	0.00	2.192	6.22	0.00	3.5	96.5	0.0	0.76	1.07	0.70	0.71	—	22359	1281	2	55	0	0	10961	logfile
✔	7U0i	26260	2025-06-15	2022-02-18	2.6	3.16	—	3.0	0.012	0.86	10.0	0.05	26.82	0.01	2.074	14.30	1.56	3.9	96.0	0.1	0.00	0.85	0.87	3.19	2.9	0.003	0.53	0.0	0.03	27.10	0.00	2.343	20.45	3.46	4.3	95.7	0.0	1.70	0.31	0.81	0.86	3.35	18108	1368	14	298	0	0	1220	logfile
✔	7U0Q	26263	2025-06-28	2022-02-18	3.86	4.24	3.87	4.2	0.009	0.97	1.0	0.05	15.03	0.00	1.978	14.35	0.08	4.6	95.4	0.0	-0.58	0.59	0.51	1.39	4.2	0.005	0.77	1.0	0.05	15.50	0.00	1.919	7.55	2.93	3.7	96.2	0.0	-0.38	1.26	0.70	0.68	1.25	32721	4106	25	0	54	0	0	logfile
✔	7U0G	26258	2025-06-16	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.56	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	3.0	0.005	0.55	0.0	0.03	26.15	0.00	2.187	20.95	2.06	5.1	94.9	0.0	1.96	1.13	0.82	0.87	2.76	18571	1510	15	266	0	0	1244	logfile
✔	7YYo	14385	2025-06-29	2022-02-18	2.87	3.03	—	3.0	0.026	1.42	0.0	0.05	20.68	0.01	2.025	12.73	12.83	5.7	94.3	0.0	-4.07	0.82	0.82	3.13	3.0	0.006	0.75	0.0	0.05	18.85	0.01	1.868	6.22	1.73	4.6	95.2	0.2	-0.18	0.62	0.86	0.86	3.55	35136	4424	24	0	16	0	0	logfile
✔	7WZ4	32904	2025-06-06	2022-02-17	3.0	3.46	—	3.4	0.003	0.59	0.0	0.04	12.94	0.00	2.096	3.26	0.12	2.7	97.3	0.0	1.09	0.65	0.85	3.69	3.4	0.003	0.53	0.0	0.04	15.88	0.00	2.560	3.20	2.19	2.3	97.7	0.0	1.52	0.93	0.62	0.85	2.98	8187	1075	5	0	0	0	0	logfile
✔	7WZ7	32905	2025-06-07	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.005	0.72	0.0	0.05	14.97	0.00	2.507	11.16	2.41	5.1	94.9	0.0	0.33	1.19	0.72	0.73	1.72	8676	1108	5	0	0	0	0	logfile
✔	7WYZ	32899	2025-06-20	2022-02-16	3.4	3.29	—	3.5	0.011	1.31	0.0	0.06	19.89	0.01	1.914	9.36	10.39	7.9	91.7	0.5	-3.16	0.73	0.82	2.02	3.4	0.004	0.68	0.0	0.04	16.70	0.00	1.901	5.05	1.46	2.6	97.4	0.0	0.80	1.37	0.77	0.88	1.90	22682	2654	22	0	78	4	0	logfile
✔	7WYY	32898	2025-06-20	2022-02-16	3.9	3.73	—	3.9	0.012	1.49	0.0	0.07	20.04	0.01	1.860	11.48	10.61	8.7	90.7	0.6	-3.53	0.71	0.78	1.06	3.9	0.004	0.69	0.0	0.04	16.85	0.00	1.865	6.57	3.23	3.1	96.9	0.0	0.26	1.41	0.74	0.83	1.45	22656	2654	22	0	78	8	0	logfile
✔	7WZ2	32902	2025-06-22	2022-02-16	2.7	2.24	—	2.1	0.003	0.72	0.0	0.05	10.24	0.01	2.236	6.44	5.57	6.6	93.4	0.0	-3.27	0.76	0.74	3.09	2.0	0.004	0.74	0.0	0.05	14.53	0.00	2.110	8.06	3.07	7.5	92.5	0.0	-1.46	0.68	0.79	0.80	3.33	25490	3228	6	0	34	0	0	logfile
✔	7YXY	14369	2025-06-12	2022-02-16	3.1	3.25	3.03	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.003	0.64	0.0	0.04	15.78	0.00	2.355	9.47	1.31	4.6	95.4	0.1	0.79	0.46	0.65	0.81	1.86	14031	1739	1	0	0	0	0	logfile
✔	7WYV	32895	2025-06-20	2022-02-16	3.7	3.47	—	3.7	0.011	1.32	0.0	0.06	20.33	0.01	1.954	9.14	10.52	8.0	91.6	0.5	-3.15	0.71	0.77	1.53	3.6	0.003	0.66	0.0	0.04	16.47	0.00	1.936	5.43	1.50	2.5	97.5	0.0	0.69	1.79	0.73	0.81	1.75	22668	2654	22	0	78	10	0	logfile
✔	7WYX	32897	2025-06-20	2022-02-16	3.4	3.47	—	3.5	0.011	1.38	0.0	0.07	20.16	0.01	1.893	10.48	10.43	8.3	91.0	0.7	-3.31	0.74	0.80	1.70	3.5	0.003	0.67	0.0	0.04	16.60	0.00	1.926	4.75	1.77	1.9	98.1	0.0	0.62	2.03	0.77	0.85	1.95	22714	2654	22	0	78	6	0	logfile
✔	7WZ1	32901	2025-06-21	2022-02-16	3.4	2.58	—	2.2	0.003	0.66	0.0	0.04	9.69	0.00	2.212	7.59	5.40	7.6	92.4	0.0	-4.14	0.74	0.73	2.32	2.2	0.003	0.74	0.0	0.05	14.37	0.00	2.441	10.13	3.82	9.5	90.5	0.0	-1.97	1.34	0.77	0.78	2.25	24467	3092	6	0	28	0	0	logfile
✔	7WYW	32896	2025-06-20	2022-02-16	3.8	3.91	—	3.8	0.011	1.47	0.0	0.07	20.11	0.01	1.861	10.73	10.30	8.7	90.7	0.6	-3.47	0.74	0.80	1.47	3.8	0.004	0.69	0.0	0.04	16.46	0.00	1.914	6.89	2.70	3.0	97.0	0.0	0.42	2.06	0.76	0.84	1.44	22606	2654	22	0	76	10	0	logfile
✔	7WYU	32894	2025-06-20	2022-02-16	3.4	3.42	—	3.4	0.011	1.32	0.0	0.06	20.27	0.01	1.911	9.36	10.48	7.5	92.1	0.3	-3.01	0.74	0.82	1.83	3.4	0.003	0.63	0.0	0.04	16.34	0.00	1.941	4.80	1.99	2.5	97.5	0.0	0.79	1.31	0.77	0.88	1.96	22662	2654	22	0	78	4	0	logfile

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