Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YXY	14369	2025-06-12	2022-02-16	3.1	3.25	3.03	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.003	0.64	0.0	0.04	15.78	0.00	2.355	9.47	1.31	4.6	95.4	0.1	0.79	0.46	0.65	0.81	1.86	14031	1739	1	0	0	0	0	logfile
✔	7WY8	32887	2025-06-06	2022-02-15	2.83	2.24	—	2.0	0.007	0.82	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.58	0.0	0.04	15.10	0.00	2.528	3.06	2.88	2.9	97.1	0.0	0.99	0.40	0.77	0.78	2.89	8049	1015	5	0	0	0	0	logfile
✔	7WYB	32890	2025-06-07	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	2.1	0.003	0.65	0.0	0.04	15.27	0.00	2.505	8.27	2.00	5.0	95.0	0.0	-0.20	0.41	0.66	0.63	1.15	8757	1115	5	0	0	0	0	logfile
✔	7WY5	32884	2025-06-06	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.002	0.57	0.0	0.04	15.65	0.00	2.508	3.70	0.92	3.5	96.5	0.0	0.96	0.38	0.78	0.78	2.23	8009	1013	5	0	0	0	0	logfile
✔	7WY0	32883	2025-06-07	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.69	0.0	0.04	15.14	0.00	2.544	9.90	3.11	4.9	95.1	0.0	0.05	0.47	0.75	0.75	2.58	8723	1112	5	0	0	0	0	logfile
✔	7WXW	32882	2025-06-06	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.1	0.002	0.56	0.0	0.04	15.62	0.00	2.561	3.82	1.69	2.9	97.1	0.0	0.50	1.17	0.77	0.78	2.76	8121	1032	5	0	0	0	0	logfile
✔	7TZ0	26201	2025-06-04	2022-02-15	4.17	3.79	—	4.4	0.003	0.63	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.003	0.68	0.0	0.04	12.35	0.00	2.377	10.08	0.35	7.9	92.1	0.0	-1.79	2.07	0.44	0.62	—	2674	347	2	0	0	0	0	logfile
✔	7TYZ	26200	2025-06-26	2022-02-15	3.51	3.89	—	3.7	0.004	0.69	0.0	0.05	17.21	0.00	2.126	7.84	0.00	8.7	91.3	0.0	-1.41	0.74	0.79	1.64	3.7	0.014	0.81	0.0	0.05	15.40	0.01	2.375	7.63	1.37	10.2	89.8	0.0	-1.59	0.96	0.76	0.85	1.94	29736	3711	27	0	66	0	0	logfile
✔	7WXU	32881	2025-06-06	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.86	0.00	2.591	3.08	1.24	3.5	96.5	0.0	0.77	1.17	0.80	0.80	2.35	8116	1034	5	0	0	0	0	logfile
✔	7TZ5	26202	2025-06-14	2022-02-15	3.41	3.66	—	3.6	0.009	1.24	9.0	0.07	13.20	0.00	2.067	15.18	0.30	10.6	89.0	0.4	-2.38	0.70	0.83	3.89	3.6	0.003	0.67	0.0	0.04	14.97	0.00	2.411	6.03	1.64	7.7	92.3	0.0	-1.21	0.70	0.68	0.83	3.60	16023	2142	9	0	0	0	0	logfile
✔	7WX3	32875	2025-06-07	2022-02-14	3.1	3.61	3.03	3.5	0.011	0.91	0.0	0.05	16.74	0.00	2.150	6.65	3.70	4.6	95.4	0.0	-3.51	0.57	0.78	1.78	3.5	0.005	0.66	0.0	0.04	16.67	0.00	2.074	5.41	3.05	3.0	97.0	0.0	-0.30	1.12	0.57	0.78	0.91	8472	1086	16	0	8	0	0	logfile
✔	7WXH	32879	2025-06-05	2022-02-14	4.3	4.50	3.80	4.3	0.006	0.86	0.0	0.04	14.12	0.00	2.067	26.18	1.74	11.4	88.3	0.2	-4.55	0.79	0.82	—	4.3	0.003	0.71	0.0	0.04	13.05	0.00	2.312	13.24	0.14	6.9	93.1	0.0	-1.66	1.31	0.78	0.81	—	6494	860	2	0	0	0	0	logfile
✔	7WXi	32880	2025-06-05	2022-02-14	4.2	4.31	4.06	4.2	0.008	0.87	0.0	0.05	15.47	0.00	2.148	24.87	0.58	18.2	81.8	0.0	-4.77	0.78	0.81	—	4.2	0.003	0.74	0.0	0.04	14.04	0.00	2.405	13.89	0.14	6.5	93.5	0.0	-0.85	1.28	0.77	0.79	—	6522	862	4	0	0	0	0	logfile
✔	7TYV	26195	2025-06-15	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.75	0.0	0.05	17.12	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.003	0.68	0.0	0.04	16.09	0.00	2.448	5.74	2.67	4.5	95.5	0.0	-0.06	0.31	0.77	0.76	2.16	17306	2114	30	0	58	0	0	logfile
✔	7WXG	32878	2025-06-04	2022-02-14	4.2	4.21	3.09	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.73	0.0	0.04	14.24	0.00	2.351	9.08	0.00	6.5	93.5	0.0	-0.62	1.22	0.51	0.78	—	3295	430	2	0	1	0	0	logfile
✔	7TYY	26199	2025-06-08	2022-02-14	3.0	2.60	2.90	2.9	0.003	0.58	0.0	0.04	13.40	0.00	2.174	7.31	2.03	1.8	98.2	0.0	-3.39	0.59	0.78	3.16	2.9	0.003	0.57	0.0	0.04	15.76	0.00	2.541	8.14	2.75	2.3	97.7	0.0	0.23	0.98	0.61	0.81	2.79	9802	1250	12	0	9	7	0	logfile
✔	7WX4	32876	2025-06-04	2022-02-14	3.4	3.64	2.78	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.55	0.0	0.04	17.77	0.00	2.448	4.72	4.57	5.2	94.8	0.0	-0.07	0.48	0.44	0.82	0.06	1992	260	2	0	0	0	0	logfile
✔	7TYo	26190	2025-06-08	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.87	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.002	0.56	0.0	0.04	16.25	0.00	2.406	5.05	2.11	1.8	98.2	0.0	0.75	1.03	0.54	0.76	3.42	9052	1141	8	0	4	0	0	logfile
✔	7TYX	26197	2025-06-09	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.53	0.0	0.04	13.25	0.00	2.231	4.31	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.005	0.66	0.0	0.05	15.25	0.00	2.404	6.24	3.33	2.6	97.4	0.0	0.69	0.58	0.47	0.68	3.86	10219	1269	9	0	14	0	0	logfile
✔	7WXF	32877	2025-06-05	2022-02-14	3.6	3.96	3.68	4.0	0.007	0.79	0.0	0.05	15.05	0.00	2.123	13.40	0.29	12.6	87.1	0.2	-4.85	0.72	0.79	1.44	4.0	0.003	0.72	0.0	0.04	16.43	0.00	2.563	7.88	2.17	6.3	93.7	0.0	-1.55	1.19	0.71	0.76	1.13	6494	860	2	0	0	0	0	logfile

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