Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WWV	32874	2025-06-19	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	16.78	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.005	0.69	0.0	0.04	18.55	0.00	2.451	6.23	2.66	10.7	89.0	0.3	-1.10	1.45	0.75	0.84	2.70	19622	2233	11	117	0	0	0	logfile
✔	7TYX	26197	2025-06-09	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.53	0.0	0.04	13.25	0.00	2.231	4.31	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.005	0.66	0.0	0.05	15.25	0.00	2.404	6.24	3.33	2.6	97.4	0.0	0.69	0.58	0.47	0.68	3.86	10219	1269	9	0	14	0	0	logfile
✔	7TYo	26190	2025-06-08	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.47	0.0	0.04	12.87	0.00	2.176	5.50	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.002	0.56	0.0	0.04	16.25	0.00	2.406	5.05	2.11	1.8	98.2	0.0	0.75	1.03	0.54	0.76	3.42	9052	1141	8	0	4	0	0	logfile
✔	7WXG	32878	2025-06-04	2022-02-14	4.2	4.21	3.09	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.73	0.0	0.04	14.24	0.00	2.351	9.08	0.00	6.5	93.5	0.0	-0.62	1.22	0.51	0.78	—	3295	430	2	0	1	0	0	logfile
✔	7WWJ	32867	2025-06-23	2022-02-13	3.5	4.15	—	3.8	0.003	0.62	0.0	0.05	13.50	0.00	2.202	8.64	0.00	3.2	96.8	0.0	0.07	0.83	0.87	2.59	3.9	0.004	0.63	0.0	0.04	14.63	0.00	2.477	6.22	1.50	4.1	95.9	0.0	0.18	0.91	0.82	0.86	2.36	26915	3367	24	0	43	0	0	logfile
✔	7WWM	32871	2025-06-25	2022-02-13	2.8	3.23	—	3.2	0.011	1.34	0.0	0.08	17.31	0.01	1.923	22.61	10.28	12.2	85.5	2.3	-4.23	0.67	0.71	2.23	3.2	0.003	0.73	0.0	0.05	16.15	0.00	2.465	5.12	2.96	6.6	93.2	0.2	-1.16	3.53	0.67	0.81	2.01	29536	3655	35	0	71	0	0	logfile
✔	7WWi	32866	2025-06-26	2022-02-13	3.5	4.12	—	3.8	0.003	0.62	0.0	0.05	13.20	0.00	2.107	7.68	0.00	2.9	97.1	0.0	0.14	0.84	0.86	2.48	3.8	0.003	0.60	0.0	0.04	14.38	0.00	2.430	6.24	1.24	3.5	96.5	0.0	0.10	0.39	0.84	0.87	2.42	30237	3791	26	0	43	0	0	logfile
✔	7WWK	32868	2025-06-05	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.004	0.62	0.0	0.04	14.93	0.00	2.512	5.69	2.90	4.2	95.8	0.0	-0.81	0.38	0.75	0.90	2.91	6620	845	6	0	0	0	0	logfile
✔	7TYN	26188	2025-06-09	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.63	1.0	0.05	13.82	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.006	0.62	0.0	0.04	16.00	0.00	2.539	5.16	2.64	2.3	97.7	0.0	1.09	0.46	0.68	0.84	3.07	9364	1154	8	0	18	0	0	logfile
✔	7TYJ	26181	2025-06-05	2022-02-13	3.3	3.29	3.44	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.002	0.61	0.0	0.04	17.04	0.00	2.606	5.97	2.62	9.4	90.5	0.1	-1.89	1.54	0.67	0.83	3.01	6338	808	2	0	0	0	0	logfile
✔	7TYF	26178	2025-06-10	2022-02-13	2.2	2.16	2.16	2.2	0.004	0.58	0.0	0.04	14.57	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.62	0.0	0.05	15.81	0.00	2.532	4.97	1.84	2.2	97.8	0.0	1.14	0.44	0.66	0.86	4.62	10331	1266	14	0	16	83	0	logfile
✔	7TYK	26183	2025-06-11	2022-02-13	3.5	3.16	—	3.5	0.015	1.39	2.0	0.04	17.40	0.00	2.189	10.53	0.65	8.5	91.1	0.4	-1.65	0.67	0.78	2.60	3.5	0.002	0.55	0.0	0.04	17.57	0.00	2.544	6.04	3.19	8.5	91.2	0.3	-1.64	1.11	0.67	0.79	2.97	12698	1618	2	0	0	0	0	logfile
✔	7TYi	26180	2025-06-08	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.57	0.0	0.04	12.81	0.00	2.217	6.55	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.003	0.56	0.0	0.04	15.26	0.00	2.602	6.02	2.80	2.9	97.1	0.0	0.29	0.52	0.63	0.82	2.50	9413	1154	8	0	13	0	0	logfile
✔	7TYL	26184	2025-06-07	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.60	0.0	0.04	12.73	0.00	2.245	6.53	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.003	0.60	0.0	0.04	15.08	0.00	2.484	6.87	1.91	4.1	95.9	0.0	0.17	0.44	0.65	0.79	2.47	8978	1156	7	0	1	0	0	logfile
✔	7WWL	32869	2025-06-25	2022-02-13	3.0	3.13	—	3.1	0.012	1.21	0.0	0.07	17.17	0.01	1.911	20.05	9.75	9.5	88.2	2.3	-3.96	0.72	0.78	2.20	3.1	0.003	0.76	0.0	0.05	16.53	0.00	2.410	6.46	2.75	5.9	94.0	0.1	-0.94	2.78	0.74	0.85	2.24	29704	3673	35	0	71	0	0	logfile
✔	7TYH	26179	2025-06-08	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.73	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.003	0.58	0.0	0.04	15.32	0.00	2.526	6.69	3.04	2.1	97.9	0.0	-0.75	0.49	0.59	0.78	2.45	9492	1246	8	0	1	0	0	logfile
✔	7TYM	26185	2025-06-10	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.175	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.4	0.004	0.60	0.0	0.04	16.48	0.00	2.589	6.04	2.67	8.5	91.5	0.0	-1.59	1.12	0.73	0.82	3.16	12112	1542	2	0	0	0	0	logfile
✔	7WWB	32865	2025-06-05	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.32	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.003	0.71	0.0	0.04	15.61	0.00	2.381	8.41	5.54	3.9	96.1	0.0	3.05	1.98	0.51	0.79	2.01	5428	666	4	0	4	0	0	logfile
✔	7R5S	14336	2025-06-24	2022-02-11	2.83	3.61	—	3.0	0.003	0.51	0.0	0.04	16.18	0.00	1.653	7.48	0.82	2.6	97.3	0.1	-0.67	0.84	0.76	2.20	3.0	0.003	0.67	0.0	0.04	17.76	0.00	2.428	6.30	1.10	2.7	97.3	0.0	2.09	0.54	0.89	0.88	2.13	26871	3126	18	82	0	1	0	logfile
✔	7WVU	32858	2025-06-06	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.52	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.003	0.59	0.0	0.04	15.44	0.00	2.591	9.78	3.56	3.2	96.8	0.0	0.53	1.13	0.61	0.79	2.14	6862	909	5	0	0	0	0	logfile

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